Gene Information

Name : D781_3938 (D781_3938)
Accession : YP_007346313.1
Strain : Serratia marcescens FGI94
Genome accession: NC_020064
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4154657 - 4155310 bp
Length : 654 bp
Strand : -
Note : PFAM: FliP family; TIGRFAM: type III secretion apparatus protein, YscR/HrcR family

DNA sequence : 
ATGGAAGCGCAGTCGCTTAATCCGATGATGCTGGCGCTGTTTCTCGGCGCGCTGTCGCTGGTGCCGATGCTGATGATCGT
CTGCACCTGTTTTCTCAAAATTTCCATGGTGCTGCTGTTGACGCGCAACGCGATGGGCGTGCAGCAGGTGCCGCCCAATA
TGGCGCTGTACGGCATCGCCCTCGCCGCGACGCTGTTTGTGATGGCGCCGGTGTTTAACGATATGAGCCAGCGGCTCAAG
GCGATGCCGCTCGACTTCAGCAATATGGAGCGGCTGGAGTACACCTTCGGCAACGGCGCCGAGCCGCTGAAGGCGTTTAT
GACGCGCAATACCGACCCGGACATTCTGACCCACCTGCAGGAGAACGGCGCGCGCATGTGGCCGAAAGAGATGGCGCAGT
CGCTGACGCCGCAAAGCCCGCTGCTGGTGATCCCGGCGTTTGTGCTGTCGGAACTGCAAAACGGTTTCAAGATCGGCTTT
CTGATCTTTATCCCCTTCCTGGTGATGGATCTGATCGTCTCCAACGTGCTGCTGGCGCTGGGGATGCAGATGGTGTCGCC
GATGACGGTCTCGCTGCCGCTGAAGATCCTGCTGTTTGTGCTGGTCAGCGGCTGGACTCGGCTGCTGGACGGCCTGTTCT
ATAGCTATCTGTGA

Protein sequence : 
MEAQSLNPMMLALFLGALSLVPMLMIVCTCFLKISMVLLLTRNAMGVQQVPPNMALYGIALAATLFVMAPVFNDMSQRLK
AMPLDFSNMERLEYTFGNGAEPLKAFMTRNTDPDILTHLQENGARMWPKEMAQSLTPQSPLLVIPAFVLSELQNGFKIGF
LIFIPFLVMDLIVSNVLLALGMQMVSPMTVSLPLKILLFVLVSGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-79 76
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-72 74
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-64 72
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-64 72
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-66 71
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-66 71
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-66 71
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-66 71
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-62 70
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-66 70
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-66 70
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-40 50
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-40 48
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-37 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-36 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-36 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-36 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-36 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-31 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-31 41
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG0044 Protein 4e-42 47
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG0188 Protein 3e-41 47
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG0394 Protein 1e-41 47
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG2338 Protein 1e-29 43
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG1773 Protein 2e-38 43
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG1259 Protein 5e-30 43
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG0519 Protein 4e-37 42
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG2016 Protein 1e-30 42
D781_3938 YP_007346313.1 type III secretion apparatus protein, YscR/HrcR family VFG2494 Protein 2e-28 42