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Name : D781_3602 (D781_3602) Accession : YP_007345991.1 Strain : Serratia marcescens FGI94 Genome accession: NC_020064 Putative virulence/resistance : Virulence Product : P pilus assembly protein, porin PapC Function : - COG functional category : - COG ID : - EC number : - Position : 3804009 - 3806567 bp Length : 2559 bp Strand : - Note : PFAM: Type VII secretion system (T7SS), usher protein; PapC C-terminal domain; PapC N-terminal domain DNA sequence : ATGAATAACCCGAAGCGTAGCAGCCCTCGAGGGTTCAGACAAACCCAGCTGGCTTGGTTGATCTCTTGCCAAGTAGCGAT GTTGATGGGCTTTTCCGGCTTGGCGCAAGCACGTGACTACTTTAACCCCGCGCTGCTGGAAATTGATAATCCTGACCAAC GAGGCGTTGATTTGTCGGTGTTCGAGGCAGGTGATACCCAGGCACCTGGGAAATATCGCGTGGATATTTATGTCAACCGC GAAATGGTGGAGACTCGCGATATAGATTTCTTTCTGAGCCGGGATCGTAGTGGTCGGAACAGCTTGCAGCCATGCTTGGA TAGTGAACTGTTGGAAGCCTTGGGAGTGCGCGTTGATGCCATTCCTGCCATTACATCCGGGGGGAAATGCGTTGATATCG CTCAGGTGATTCCTCAGGCCTCATCGACTTTTCGTTTCAACCAACAGCGTCTGGAATTAAGTATTCCTCAGGCCGCCCTT AAAATACGGGCGCGTGGTTACGTTTCACCGAAAAAATGGAATTCTGGCATACCAGCATTGCTGGCTAACTATAGTTTCAG CGGCGCGAATAATAAAGCACGGCGTGGCGACGGCCGTGACAGTGACAGTTATTATCTGAACCTGCGTTCCGGGCTTAATC TGGGAGCGTGGCGTTTACGGAACTATTCTACCTGGAACCGCGATAGCAATGGCGAGAAGCAGTGGCGTTCCATTAATACC TATCTACAGCGCGATATTATTGCGTTAAAAAGTCGCCTTACCCTTGGCGATAGCAGTTCGTCGAGCGATGTATTCGACAG CATGCCGTTTCGCGGCGCCCAGTTGGCTTCTGATGATGATATGCTGCCAGACAGCATGAAAGGCTATGCGCCAGTGGTGC GTGGTATTGCCAAAAGCAACGCGCAGGTCACCATCCGACAAAACGGCTATGTGATCTATCAGAGCTATGTGTCGCCAGGA CCGTTTGAAATTAACGACCTGTACCCGACATCGGGGAGTGGTGACTTAAAGGTCACGATCAAGGAAGCAGACGGCAGCGA ACAGAATATAACGGTGCCGTTTGCCTCGGTGCCGGTACTGCAGCGTGAAGGGCGCTTCAAATACAACATCGCCAGCGGCC AGTTCCGCTCTAACCTTAATGACGTAGACAAGCGGCCATTCACCCAGGCGACAGGCATTTATGGCCTACCGTGGGGAGCG ACGCTCTACGGGGGTATTCAGGCTGCCAGTAAATATCAGGCGTTGGCATTGGGCTGGGGGCAGAACCTCGGTCTGTTAGG GGCCTTGTCAGCTGATGTGACGCAGGCATGGACCAAACCAGAGTTGCAGCCAAAAGAGCATGGTCAATCATGGCGTCTGC GCTACGGTAAGAGCTTTGCCGAAACGGGCACCAGCTTCAGCCTGGCAAGCTACCGCTATTCGACCAAAGGTTTCTACACC ATGCAGGAAGCGTTGGAAACCTATACCAACGGTGCGTCGATCCGCTTCCCATTGCATAAGAAGAGCCGCTCTGAGCTCAC CATGAACCAGAACCTGTGGGAAGGTGCCGGCGCGTTGTCGTTGAGCCTAATGAACGAAGAGTTCTGGAACGACAGTCGTC GCAGCCAGTCTGCCAGCGTGGGTTACAACAACAGTTGGTCTGGCGTCAGCTACGGGCTGTATTACACCTATGCCAAGAAT GGTTATAACAGCGATGGCTACCGCACCAATAACGAAGACCATATTGTGGCCTTCAACGTCAGCGTGCCGCTCAGCCGTTG GTTGCCGGGGGCTAACGCAACCTATAGCGTTAACAGCAGCCGCAACGGCAATACTTCGAACCGGGTTGGGTTACATGGTA CCGCATTGGAAAGGCGTAACCTGAGTTATAGCATCAGTCAGGGCTATACCAGTCAGGGGCAAGGGGCCAGTGGTAATGCC AACGTTGATTATCGCGGCGGCTTGGGGCAGGCAAGCGTAGGCTATGGCTACGATCGTGATATGCAGCGCCTGAGCTATGG TCTGCAGGGCGGTATTGTGCTGCATGAAAATGGTCTGACGCTGTCCCAGCCGTTGGGTGACACCATTGCATTGGTCAAAG CGCCGGGCGCGAAAGGCGTTCGCATTCAAAACCAGACGGGTGTAAGTACCGACTGGCGGGGGTACGCCATAGTGCCGTAT CAGTCGCCGTACCGCCGCAACAATATCAACTTGGATACCACGACGCTGCCGGACGATGTCGATATTGCATTAACCAGTCA GTCGGTAGTGCCAACGCGTGGAGCCGTAGTACGCGCGGAATTTAAAGCCAATATCGGCCAACGCGTGTTGATGACGCTGT TGCGTCAAGGTGGTGCTGCGGTGCCGTTTGGCGCTACCGTCACCGATTTGCTCAACCCAGATAACAGTGCCGCAATCGTC GGCGATAGTGGTCAGGTGTACCTGTCCGGTCTGACGGATAGCGGCAAGCTGAATGTGAAATGGGGCAACGGAGCCTCGCA GCAGTGTCAGGTGACTTACAGCTTGGGGGCCCCTGTGCAGAATTCCACGATCCGTACGGCTAACGCTCAGTGCTTATAA Protein sequence : MNNPKRSSPRGFRQTQLAWLISCQVAMLMGFSGLAQARDYFNPALLEIDNPDQRGVDLSVFEAGDTQAPGKYRVDIYVNR EMVETRDIDFFLSRDRSGRNSLQPCLDSELLEALGVRVDAIPAITSGGKCVDIAQVIPQASSTFRFNQQRLELSIPQAAL KIRARGYVSPKKWNSGIPALLANYSFSGANNKARRGDGRDSDSYYLNLRSGLNLGAWRLRNYSTWNRDSNGEKQWRSINT YLQRDIIALKSRLTLGDSSSSSDVFDSMPFRGAQLASDDDMLPDSMKGYAPVVRGIAKSNAQVTIRQNGYVIYQSYVSPG PFEINDLYPTSGSGDLKVTIKEADGSEQNITVPFASVPVLQREGRFKYNIASGQFRSNLNDVDKRPFTQATGIYGLPWGA TLYGGIQAASKYQALALGWGQNLGLLGALSADVTQAWTKPELQPKEHGQSWRLRYGKSFAETGTSFSLASYRYSTKGFYT MQEALETYTNGASIRFPLHKKSRSELTMNQNLWEGAGALSLSLMNEEFWNDSRRSQSASVGYNNSWSGVSYGLYYTYAKN GYNSDGYRTNNEDHIVAFNVSVPLSRWLPGANATYSVNSSRNGNTSNRVGLHGTALERRNLSYSISQGYTSQGQGASGNA NVDYRGGLGQASVGYGYDRDMQRLSYGLQGGIVLHENGLTLSQPLGDTIALVKAPGAKGVRIQNQTGVSTDWRGYAIVPY QSPYRRNNINLDTTTLPDDVDIALTSQSVVPTRGAVVRAEFKANIGQRVLMTLLRQGGAAVPFGATVTDLLNPDNSAAIV GDSGQVYLSGLTDSGKLNVKWGNGASQQCQVTYSLGAPVQNSTIRTANAQCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 3e-160 | 45 |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 5e-159 | 44 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 1e-140 | 43 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 3e-139 | 43 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 3e-139 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| D781_3602 | YP_007345991.1 | P pilus assembly protein, porin PapC | VFG0454 | Protein | 7e-180 | 46 |
| D781_3602 | YP_007345991.1 | P pilus assembly protein, porin PapC | VFG0446 | Protein | 8e-155 | 46 |
| D781_3602 | YP_007345991.1 | P pilus assembly protein, porin PapC | VFG1645 | Protein | 2e-160 | 45 |
| D781_3602 | YP_007345991.1 | P pilus assembly protein, porin PapC | VFG0912 | Protein | 1e-160 | 45 |
| D781_3602 | YP_007345991.1 | P pilus assembly protein, porin PapC | VFG0876 | Protein | 4e-163 | 44 |
