Gene Information

Name : D781_3444 (D781_3444)
Accession : YP_007345847.1
Strain : Serratia marcescens FGI94
Genome accession: NC_020064
Putative virulence/resistance : Virulence
Product : DNA repair protein radc
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3634114 - 3634656 bp
Length : 543 bp
Strand : +
Note : PFAM: RadC-like JAB domain; TIGRFAM: DNA repair protein radc

DNA sequence : 
ATGAGTACCGCAATATCCCCACTGTTATCGCAGCCTGAACTCTTGCCGGTGTCGGTCATGGCTCAGCATGGCTGTTTACT
CCCTACGACTTCCGGACTGACACCATACGCCCAGCGGACCATTCGCCGCGCAATCAACCTGCTGGATAAATATCTGCGTC
AGCCCGGTATAGCCTTTACCTCAAGTACTGCAGCCCGTGACTGGCTCCGGTTACAACTGGCCAGACAGGAGCGGGAAGTG
TTTATGGTGCTCTATCTCGATAATCAGCATCGTTTACTGGAGAGTGAAACGCTGTTTGCCGGTTCGGTAAACCATGTGCA
GGTTCATTCCCGTGAGGTGGTGAAGTCGGCGCTTCGTTTCAATGCTGCAGCTGTCGTACTGGCGCATAACCATCCATCCG
GCGACCCGGAGCCCAGCCAATGCGATCGCAACATTACCGGTAGGCTTAAAGAAGCCCTGGCACTGGTTGATGTGAACACG
CTTGATCATCTGGTCGTCGGTTCAGATGGCATTGTGTCGTTCGCGGAGCGAGGGTGGATATGA

Protein sequence : 
MSTAISPLLSQPELLPVSVMAQHGCLLPTTSGLTPYAQRTIRRAINLLDKYLRQPGIAFTSSTAARDWLRLQLARQEREV
FMVLYLDNQHRLLESETLFAGSVNHVQVHSREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALALVDVNT
LDHLVVGSDGIVSFAERGWI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-34 60
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-35 56
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-28 56
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-35 55
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 5e-36 55
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 5e-36 55
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-35 55
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-35 55
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 3e-35 55
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-36 55
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 1e-35 55
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-35 55
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 1e-35 55
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-35 55
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 1e-35 55
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 8e-35 55
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-35 55
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 8e-34 54
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 9e-35 54
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 9e-35 54
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-32 51
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-32 51
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-33 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_3444 YP_007345847.1 DNA repair protein radc VFG1678 Protein 5e-36 55
D781_3444 YP_007345847.1 DNA repair protein radc VFG1617 Protein 4e-36 55
D781_3444 YP_007345847.1 DNA repair protein radc VFG1528 Protein 7e-36 55
D781_3444 YP_007345847.1 DNA repair protein radc VFG1066 Protein 5e-36 55
D781_3444 YP_007345847.1 DNA repair protein radc VFG0660 Protein 3e-35 54
D781_3444 YP_007345847.1 DNA repair protein radc VFG1119 Protein 9e-33 51