Gene Information

Name : D781_2018 (D781_2018)
Accession : YP_007344484.1
Strain : Serratia marcescens FGI94
Genome accession: NC_020064
Putative virulence/resistance : Virulence
Product : DNA-binding domain-containing protein, AraC-type
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2133915 - 2134301 bp
Length : 387 bp
Strand : -
Note : PFAM: Helix-turn-helix domain

DNA sequence : 
ATGACCGAACAACTTCATATAACACTTGTCGTGGAGCTCAGCCGTTGGATAGAAAACCATCTGGGCCGAGCCATTCAGTT
ACCCGAACTCGCCGCCTACTCCGGCTATTCGCTTTGGTATATGCAGAAGGTTTTTAAGGAGATTTCCGGCTATTCGCTGG
GGCGTTACATCCGCGAACGCCGACTGATGGGCGCGCTGCGCAAACTGCGTTTTTCCGAGCAGAGCCTGTTTGATATCGCC
ATTGATTTTGGCTTCGGCTCGCAGTCGCACTTTTGCTATATGTTTAAAAAGCGCTTCGGCTGCACCCCGTCCGAGCTGCG
CAGCACGCCGGCGCTGCCGATCGCGCTGACGCCGCCGCTGCATGAGCAGCTGCCGCAGGCCGCTTAA

Protein sequence : 
MTEQLHITLVVELSRWIENHLGRAIQLPELAAYSGYSLWYMQKVFKEISGYSLGRYIRERRLMGALRKLRFSEQSLFDIA
IDFGFGSQSHFCYMFKKRFGCTPSELRSTPALPIALTPPLHEQLPQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_2018 YP_007344484.1 DNA-binding domain-containing protein, AraC-type CP001138.1.gene4488. Protein 2e-18 41
D781_2018 YP_007344484.1 DNA-binding domain-containing protein, AraC-type NC_002695.1.914293.p Protein 4e-19 41
D781_2018 YP_007344484.1 DNA-binding domain-containing protein, AraC-type CP000034.1.gene4505. Protein 9e-19 41
D781_2018 YP_007344484.1 DNA-binding domain-containing protein, AraC-type BAC0371 Protein 4e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_2018 YP_007344484.1 DNA-binding domain-containing protein, AraC-type VFG0585 Protein 2e-18 41