Gene Information

Name : D781_1957 (D781_1957)
Accession : YP_007344428.1
Strain : Serratia marcescens FGI94
Genome accession: NC_020064
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+/Zn2+ transport system, permease component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2059200 - 2060066 bp
Length : 867 bp
Strand : -
Note : PFAM: ABC 3 transport family

DNA sequence :
ATGGTGGAAATCCTGCTGCAGCCCTTTAACTACAACTACATGGTGAAGGCCATCTGGGTCAGCGCCATCGTCGGCGCGGC
CTGCGCCTTCCTCTCCGCCTACCTGATGCTGAAGGGCTGGTCGCTGATGGGCGACGCGCTGTCGCACTCGGTGGTGCCCG
GCGTGGCCGGCGCCTACGCGCTGGGGCTGCCCTACGCCGCCGGCGCCTTCTTCACCGGCATGCTGGCGGCGCTGGCGATG
ACGCTGGTGCGCCATATCACCCGCCTGCGCGAAGACGCGATTATCGGCTTTATCTTCTCCACCTTTTTCGCCGCCGGCCT
GCTGATCGTCTCCCTGAACCCGACCTCGGTCAACGTCCAGTCGATTATCTTCGGCAATATTCTCGGCATCGCCGATGAAG
ACGTGCTGCAGGTGGAAATTATCATCGGCGTTTCGCTGCTGATCCTCTGCCTGTTGTGGAAAGATCTGCTGGCGGTGTTT
TTCGACGAAAGCCACGCCGTCTCCATCGGTCTGTCGCCGCTGCGGCTGAAAATTCTGTTTTTCACCCTGCTCAGCGCCTG
TACCGTCGCGGCGCTGCAAACCGTCGGGGCGATACTGGTGATCGCCATGGTGATCACTCCCGGCGCTACCGCCTATCTGC
TGACCGACCGCTTCAGCCGGCTGATCGTCATCGCCCTGTGCATCGGCGCGCTGACCAGCGCCGCCGGCGCCTACCTGAGC
TTCTTCCTTGACGGCGCCACCGGCGGCGTGATCGTTACGCTGCAAACCCTGGTGTTTCTGCTGGCGTTCGTCCTTGCGCC
CAAACATGGCCTGCTGGCGTCCCGACGCCGGGCCGCACACCACGCCGGCCCGCAGGAGGAAGAGTGA

Protein sequence :
MVEILLQPFNYNYMVKAIWVSAIVGAACAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLVRHITRLREDAIIGFIFSTFFAAGLLIVSLNPTSVNVQSIIFGNILGIADEDVLQVEIIIGVSLLILCLLWKDLLAVF
FDESHAVSIGLSPLRLKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFSRLIVIALCIGALTSAAGAYLS
FFLDGATGGVIVTLQTLVFLLAFVLAPKHGLLASRRRAAHHAGPQEEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-67 68
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-67 68
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-67 68
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-67 68
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-67 68
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-34 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-34 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-34 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-34 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_1957 YP_007344428.1 ABC-type Mn2+/Zn2+ transport system, permease component BAC0441 Protein 1e-89 92
D781_1957 YP_007344428.1 ABC-type Mn2+/Zn2+ transport system, permease component BAC0351 Protein 1e-67 68
D781_1957 YP_007344428.1 ABC-type Mn2+/Zn2+ transport system, permease component BAC0352 Protein 8e-35 42
D781_1957 YP_007344428.1 ABC-type Mn2+/Zn2+ transport system, permease component BAC0442 Protein 9e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D781_1957 YP_007344428.1 ABC-type Mn2+/Zn2+ transport system, permease component VFG0527 Protein 1e-67 68
D781_1957 YP_007344428.1 ABC-type Mn2+/Zn2+ transport system, permease component VFG0528 Protein 7e-35 42