Gene Information

Name : D782_4205 (D782_4205)
Accession : YP_007342277.1
Strain : Enterobacteriaceae bacterium FGI 57
Genome accession: NC_020063
Putative virulence/resistance : Resistance
Product : transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4397184 - 4397513 bp
Length : 330 bp
Strand : +
Note : PFAM: Helix-turn-helix domain

DNA sequence : 
ATGTCCCATCGGGAAATTATTCAAACGCTTATCGAATGGATAGATGAACATATCGATCAACCACTTAACATTGATGTCGT
GGCGAAAAAATCCGGGTACTCGAAATGGTATCTGCAACGGATGTTCCGCACCGAGATGCATCAAACGCTGGGCGACTACA
TTCGCCAGCGCCGTCTGTTATTGGCCGCACAGGAGCTGCGAAATACCCAGCGCCCGATTTTCGATATTGCGATGGACCTG
GGTTATGTTTCCCAGCAGACCTTCTCGCGCGTATTCCGCCGCGAATTCGACCGCACGCCGAGCGACTATCGCCACCGTCT
TTCCGCATGA

Protein sequence : 
MSHREIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTEMHQTLGDYIRQRRLLLAAQELRNTQRPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRLSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 4e-37 93
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 8e-15 47
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 8e-15 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP001138.1.gene4488. Protein 1e-37 93
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP001918.1.gene327.p Protein 3e-38 93
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP000647.1.gene4499. Protein 4e-38 91
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain NC_002695.1.914293.p Protein 1e-36 91
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain BAC0371 Protein 1e-36 91
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP000034.1.gene4505. Protein 2e-36 90
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP001138.1.gene612.p Protein 3e-19 48
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain NC_010558.1.6276025. Protein 4e-15 47
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP000647.1.gene1624. Protein 1e-16 44
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP001918.1.gene2033. Protein 6e-17 44
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain NC_002695.1.917339.p Protein 4e-17 43
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain BAC0560 Protein 4e-17 43
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP001138.1.gene1637. Protein 5e-17 43
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain CP000034.1.gene1596. Protein 4e-17 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain VFG0585 Protein 1e-37 93
D782_4205 YP_007342277.1 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain VFG1038 Protein 3e-15 47