Gene Information

Name : D782_3965 (D782_3965)
Accession : YP_007342049.1
Strain : Enterobacteriaceae bacterium FGI 57
Genome accession: NC_020063
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4140010 - 4141263 bp
Length : 1254 bp
Strand : -
Note : PFAM: Domain of unknown function (DUF4102); Phage integrase family

DNA sequence :
ATGGCTCTAACAGATATCAAAGTCAGAACAGCCAAGCCAATGGATAAGCAATATAAGCTGACCGATGGCAACGGTATGCA
TCTTCTCGTCCATCCTAATGGTTCTAAGTACTGGCGTTTGCAGTACCGTTTTGACGGCAAGCAAAAGATGCTGGCTTTGG
GTGTATATCCTGATGTGTCTCTTGCCGATGCCAGAACTCGTCGTGAAGAGGCTCGAAAGTTGGTGGCGAACGGCATCGAT
CCGGGAGACAAAAAGAAAAATGATAAGGTTGAGCAGGAAGACGCTCGTACTTTCGAACAACTTGCTATTGAGTGGCACGC
CACGAATAAAAAGTGGTCGGAAGAACATAGCCGACGAGTGCTGAAAAGCTTGGAGGACAATCTATTTCCTGCCATTGGTA
AGCGAAATATTACTGAACTCAAAACTCGAGATCTGTTAGCCCCTATCAAAGTTGTTGAACTGTCAGGGCGTCTTGAAGTG
GCTTCACGGCTGCAACAGCGAACAACTGCAATTATGCGTTATGCCGTTCAGAGCGGTTTGCTTGACTACAATCCCGCGCA
GGAAATGGTTGGTGCTGTTGCTTCAAGTAACCGGCAGCATCGACCGGCGTTAGAGTTGAAGCGTACTCCCGAACTGCTTC
AGCGTATTGGCAGCTATACAGGCAGGCCACTGACTCGCCTTGCTGTTGAGCTAACTCTCTTGGTCTTTATCCGTTCCAGT
GAACTGCGTTTTGCTCGTTGGTCAGAGATCGATTTTGAAACATCTATGTGGACGATTCCAGCCGAGCGAGAAGCTATTGA
GGGAGTAAAGCACTCACAGCGTGGCTCAAAAATGCGTACACCTCATCTGGTGCCACTTTCCCGACAGGCTCTGGAGATTC
TCGAGCAGATAAAGACTTTCAGTGGCGATCACGAACTGATCTTTATTGGCGATCATAATCCTCGCAAACCGATGAGTGAG
AACACGGTAAACAAATCTCTGCGAGTGATGGGATATGACACTCAGGTTGAAGTCTGTGGTCACGGTTTCAGGACAATGGC
GTGTAGTTCGTTGATTGAGTCAGGGTTGTGGTCGAGGGATGCAGTAGAGAGGCTGATGAGTCATATGGAGCGTAACTCTG
TGCGGGCGGCTTACATTCATAAAGCCGAGCATCTTGATGAGCGCAAACTGATGCTGCAATGGTGGGCTGATTTTCTGGAT
GCGAATAGGGAGAAGGCAGTGAGTCCGTTTGATTTTGCCAAGCTTGGGCGATGA

Protein sequence :
MALTDIKVRTAKPMDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFDGKQKMLALGVYPDVSLADARTRREEARKLVANGID
PGDKKKNDKVEQEDARTFEQLAIEWHATNKKWSEEHSRRVLKSLEDNLFPAIGKRNITELKTRDLLAPIKVVELSGRLEV
ASRLQQRTTAIMRYAVQSGLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIGSYTGRPLTRLAVELTLLVFIRSS
ELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALEILEQIKTFSGDHELIFIGDHNPRKPMSE
NTVNKSLRVMGYDTQVEVCGHGFRTMACSSLIESGLWSRDAVERLMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLD
ANREKAVSPFDFAKLGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-166 84
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-147 69
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-149 69
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-149 69
int AAK00456.1 Int Not tested SHI-1 Protein 1e-139 69
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-149 69
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-149 69
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-149 69
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-148 69
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-148 69
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-149 68
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-149 68
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-149 68
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-147 68
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-147 68
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-148 68
int AAL51003.1 CP4-like integrase Not tested LEE Protein 6e-148 68
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-148 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-148 68
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-149 68
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-149 68
int CAC81896.1 integrase Not tested LEE II Protein 6e-139 68
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-132 62
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-132 62
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-121 59
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-83 57
int CAB59974.1 integrase Not tested HPI Protein 1e-116 57
int YP_002346908.1 integrase Not tested HPI Protein 6e-115 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 6e-115 56
int2 NP_993013.1 integrase Not tested HPI Protein 6e-115 56
int CAA08754.1 integrase Not tested HPI Protein 2e-115 56
int CAA21384.1 - Not tested HPI Protein 6e-115 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-96 56
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-111 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 7e-118 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 7e-118 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 8e-107 53
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-87 45
int CAC39282.1 integrase Not tested LPA Protein 2e-87 45
int AAD44730.1 Int Not tested SHI-2 Protein 6e-87 45
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-85 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-85 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-85 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-85 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-85 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-85 43
int ACU09430.1 integrase Not tested LEE Protein 1e-85 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 7e-82 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-77 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D782_3965 YP_007342049.1 Integrase VFG1536 Protein 1e-166 84
D782_3965 YP_007342049.1 Integrase VFG0626 Protein 9e-150 69
D782_3965 YP_007342049.1 Integrase VFG1693 Protein 7e-149 68
D782_3965 YP_007342049.1 Integrase VFG0598 Protein 7e-86 44
D782_3965 YP_007342049.1 Integrase VFG0783 Protein 6e-86 43