Gene Information

Name : RTCIAT899_PC04970 (RTCIAT899_PC04970)
Accession : YP_007337336.1
Strain :
Genome accession: NC_020062
Putative virulence/resistance : Virulence
Product : CtrC-like capsule polysaccharide ABC exporter, permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1056976 - 1057785 bp
Length : 810 bp
Strand : +
Note : -

DNA sequence : 
GTGCATCAGGTATCGGCAGGCGCGCGTGGGGATTCGCAGTTCATTACCGGATTGAAGATTCAGGGGCGCGTCCTTGGTGC
GCTGATCATGCGCGAAATGCTCATACGCTATGGGCGGGAAAACATCGGCTTCCTGTGGCTTGCGCTGGAACCGATGATCC
TGACCACGGGTGTCATGATCATGTGGACGCTGCTCAATCACGAGGCGCATGGATTGACGGTCGCGGCTTTCGTTTTGAGC
GGCTATATGCCGCTGACGCTCTGGCGCCACATAAGTGGTCACGCGGTCTCTTGTCTTCGTCAGAACATGCCTCTGATGTA
TCATCGTCAGATCCGCTTCGCGGATGCACTGATTGCTCGCGCACTTCTGGAGATTGCCGGCACGACCGCAGCGCTCATCA
TCGTCTACACGGTTGCGCGTTTGGCAGGCATCATCCCGCCGTTCCAGGATCTCGGCCTGCTTTTGACAGGTTGGCTGTTC
ATGGCCTGGTTTTCGTTCGGAGTAGGGCTTATCTTTGCCGCGAGTTCGGAGCGGTTCGAGTTCGTCGAGAAGTTCATACC
GCCGTTCCAATATCTGACGCTGCCGATCTGCGGCATGTTCTTCATGGTGGCCTGGCTTCCCAGTGGCGCCCAGAAGCTGG
CGCTTTATGTCCCAACCGTCCACTGCTTTGAGCTTTTCCGCGCCGGCGTATTTGGCGACACGGTGCAGACCTTCTACGAC
GTCAGCTATCTTTTGAAATGCTGCCTGTTCACCACCGCCGTCGGCCTCTTTCTGGTCAACGTGGCACGCAGCCACATCAA
GTTCGAATGA

Protein sequence : 
MHQVSAGARGDSQFITGLKIQGRVLGALIMREMLIRYGRENIGFLWLALEPMILTTGVMIMWTLLNHEAHGLTVAAFVLS
GYMPLTLWRHISGHAVSCLRQNMPLMYHRQIRFADALIARALLEIAGTTAALIIVYTVARLAGIIPPFQDLGLLLTGWLF
MAWFSFGVGLIFAASSERFEFVEKFIPPFQYLTLPICGMFFMVAWLPSGAQKLALYVPTVHCFELFRAGVFGDTVQTFYD
VSYLLKCCLFTTAVGLFLVNVARSHIKFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrC NP_273137.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 7e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_PC04970 YP_007337336.1 CtrC-like capsule polysaccharide ABC exporter, permease protein VFG2564 Protein 1e-44 41
RTCIAT899_PC04970 YP_007337336.1 CtrC-like capsule polysaccharide ABC exporter, permease protein VFG0257 Protein 3e-39 41