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Name : RTCIAT899_PC04380 (RTCIAT899_PC04380) Accession : YP_007337219.1 Strain : Genome accession: NC_020062 Putative virulence/resistance : Resistance Product : putative major facilitator superfamily (MFS) drug efflux transporter Function : - COG functional category : - COG ID : - EC number : - Position : 927255 - 928451 bp Length : 1197 bp Strand : + Note : - DNA sequence : ATGTCTGATATACGCCCGTCATGGGCCTACTCGCTGCCGGCGGCACTGCTGCTGATGGCGCCTTTTGATATCCTCGCCTC GCTGGCCATGGATATCTACCTTCCTGTCGTGCCGTCGATGCCCGCTATTCTCAACACCACACCTGCTGTGATCCAGCTGA CACTGAGCCTCTACATGATCATGCTGGGTCTCGGGCAGGTGGTGTTCGGCCCGCTTTCGGATCGTATCGGCCGTCGCCCA GTCCTGCTTTCCGGCGCGCTTGTGTTTGCCGCATCTTCCTTTGGGGCAGCTCTTGCAGGAAGCGCTCCCATCTTCGTGCT ATGCCGCCTGCTGCAGGCCATCAGCGCGTCGGCGGCCTTGGTCGCGACCTTCGCGACCGTGCGGGATGTTTACGGCAATC GTCCGGAGCAGGCCATTATCTATGCCACATTCGGATCGATACTCTCCTTCGTGCCGGCGCTCGGTCCGATAGCCGGCGCG ATCATTGCCGAGCGGTTCGGGTGGCGCGCCATTTTTATATTGCTCTCGCTTCTGGCATTGGCCGCGACCTTTCACGCCAT GGCGAAGTGGCATGAAACAAGGCCCCAAGGCTCGACCGCGCCGCGCCGGTCTATCTGGCCGATCTTCAGAAGTCGATCGT TCTGGACCTATACGCTCGCCTTCAGTGCCGGCATGGGGACATTCTTCGTGTTCTTCTCGACCGCTCCTCGCGTGCTGATC GGCAGGGCCGGCTACTCAGAACTCGGTTTCAGCATTGCCTTTGCAACGGTTGCCGTCGTGATGATTGCGGCGGCACGCTT CGCCGGATGGTTTGTCGAAAGATGGGGTGTCGCAGGCTGTGTTGCGCGGGGCATGGGACTGCTTCTTATCGGTGCGGCAG CTCTTGCGCTTGGCCAACTCCATGGAATGCCGTCCTTCGCAAGCTTCGTGCTGCCGATGTGGATCATGGCGGTCGGCATC GTCTTTGCGGGATCGGTTACGGCGAATGGGGCGCTGGCGGAATTCGGCGATATCGCCGGATCGGCGGTGGCGTTCTATTT CTGTATTCAGAGCCTGATTGTGAGTCTCGTCGGAACGCTGGCGGTCACCGCACTGGATGGCGATAGCGCATGGCCGCTTG TGGCTTTCTCCGCTGTCATGGCGCTGCTGGTATTGGCAGCACTTCATAGGCTGCGGCGTCACACCGCCTTGGCTTGA Protein sequence : MSDIRPSWAYSLPAALLLMAPFDILASLAMDIYLPVVPSMPAILNTTPAVIQLTLSLYMIMLGLGQVVFGPLSDRIGRRP VLLSGALVFAASSFGAALAGSAPIFVLCRLLQAISASAALVATFATVRDVYGNRPEQAIIYATFGSILSFVPALGPIAGA IIAERFGWRAIFILLSLLALAATFHAMAKWHETRPQGSTAPRRSIWPIFRSRSFWTYTLAFSAGMGTFFVFFSTAPRVLI GRAGYSELGFSIAFATVAVVMIAAARFAGWFVERWGVAGCVARGMGLLLIGAAALALGQLHGMPSFASFVLPMWIMAVGI VFAGSVTANGALAEFGDIAGSAVAFYFCIQSLIVSLVGTLAVTALDGDSAWPLVAFSAVMALLVLAALHRLRRHTALA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| floRc | AGK06972.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 7e-101 | 73 |
| floRc | AGK07102.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 7e-101 | 73 |
| flo | AAK02049.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 7e-101 | 73 |
| floR | YP_005176183.1 | florfenicol / chloramphenicol efflux protein | Not tested | ICEPmu1 | Protein | 5e-100 | 72 |
| cmlA9 | ABZ01840.1 | CmlA9 chloramphenicol efflux protein | Not tested | SGI2 | Protein | 4e-100 | 72 |
| cmlA | CAJ77032.1 | chloramphenicol and florfenicol resistance protein | Not tested | AbaR1 | Protein | 4e-100 | 72 |
| cml(A)5 | ACY75522.1 | CmLA(5) | Not tested | Tn6060 | Protein | 2e-61 | 50 |
| cmlA5 | CAJ77046.1 | Chloramphenicol resistance protein | Not tested | AbaR1 | Protein | 2e-61 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RTCIAT899_PC04380 | YP_007337219.1 | putative major facilitator superfamily (MFS) drug efflux transporter | DQ984668.gene.p01 | Protein | 1e-61 | 50 |
| RTCIAT899_PC04380 | YP_007337219.1 | putative major facilitator superfamily (MFS) drug efflux transporter | AF294653.1.gene4.p01 | Protein | 3e-62 | 50 |
| RTCIAT899_PC04380 | YP_007337219.1 | putative major facilitator superfamily (MFS) drug efflux transporter | DQ522237.1.gene4.p01 | Protein | 1e-61 | 50 |
| RTCIAT899_PC04380 | YP_007337219.1 | putative major facilitator superfamily (MFS) drug efflux transporter | NC_010410.6003586.p0 | Protein | 1e-61 | 50 |
| RTCIAT899_PC04380 | YP_007337219.1 | putative major facilitator superfamily (MFS) drug efflux transporter | AF156486.gene.p01 | Protein | 1e-60 | 49 |
