Gene Information

Name : RTCIAT899_PB02160 (RTCIAT899_PB02160)
Accession : YP_007336224.1
Strain :
Genome accession: NC_020061
Putative virulence/resistance : Unknown
Product : putative IS3 family transposase, IS51 group, OrfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 400145 - 401050 bp
Length : 906 bp
Strand : +
Note : -

DNA sequence : 
ATGATTTCCTTCATCGACGAACACCGCTCAAAGTTCGGGGTCGAGCCGATCTGCAGGCTGCTGCCGATTGCCCCGTCCAC
TTACTATGACGCCATCGCCAAGCGCACGGACGTGGACCGCCTGTCGGCCCGCGCTCGTCGCGACGCGGCCATGAAGGTCG
AGATACGCCGAGTGTTCAATGAGAATTTCCAAGTCTACGGCGTGCGGAAAGTATGGCGGCAGTTGCAGCGGGAAGGCTTC
GACATAGCTCGATGCACTGTTTCTCGGCTTATGAGAATGATGGGTCTTCAGGGCATTATCCGTGGAAAGCCCGTCAAAAC
GACCGTGTCTGACAAGGCCGCTCTATGTCCGCTCGACCGCGTGAACCGCCAGTTCTGCGCTCCCGCGCCGAACATGTTGT
GGCTTTCCGATTTCACGTATGTAGCCACTTGGCAAGGCTTCGTTTACGTCGCTTTCGTGATCGACGCGTTCGCCCGCCGC
ATCGTCGGCTGGCGGGCGAGCCGAACCGCTCATGCGGGTTTCGTCCTCGATGCCCTGGACCAGGCACTCCATGACCGGCG
GCCAGTCCATCGCGGTGGGCTCATCCACCACTCCGACAGGGGTGTTCAATACGTATCGATTAAGTATTCCGAACGGCTGG
CGGAGGCAGGCATCGAGCCTTCCGTTGGAAGCGTCGGCGACAGTTACGACAACGCTCTCGCCGAAACGATCAACGGCCTC
TACAAGGCCGAGGTCATCCATCGGCGGGGACCATGGCGCAATTTCGAAGCCGTGGAGTTCGCCACACTCGAATGGGTGGA
TTGGTTCAACAACCGGCGTCTTCTGGAGCCCATAGGAAACATTCCGCCTGCCGAAGCCGAAGAACGTTACTATGCCATGC
TGGACGAGCCAGCCATGGCCGCATAA

Protein sequence : 
MISFIDEHRSKFGVEPICRLLPIAPSTYYDAIAKRTDVDRLSARARRDAAMKVEIRRVFNENFQVYGVRKVWRQLQREGF
DIARCTVSRLMRMMGLQGIIRGKPVKTTVSDKAALCPLDRVNRQFCAPAPNMLWLSDFTYVATWQGFVYVAFVIDAFARR
IVGWRASRTAHAGFVLDALDQALHDRRPVHRGGLIHHSDRGVQYVSIKYSERLAEAGIEPSVGSVGDSYDNALAETINGL
YKAEVIHRRGPWRNFEAVEFATLEWVDWFNNRRLLEPIGNIPPAEAEERYYAMLDEPAMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 9e-63 64
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 8e-63 64
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 7e-74 64
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-59 63
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-79 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-79 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-79 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-79 62
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-78 62
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-81 62
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-81 62
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-80 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-81 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 9e-80 61
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-79 61
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-80 61
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-79 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-79 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-79 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 6e-80 61
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-78 60
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-55 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-54 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-41 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_PB02160 YP_007336224.1 putative IS3 family transposase, IS51 group, OrfB VFG1602 Protein 3e-78 60