Gene Information

Name : RTCIAT899_CH18215 (RTCIAT899_CH18215)
Accession : YP_007335551.1
Strain : Rhizobium tropici CIAT 899
Genome accession: NC_020059
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3715860 - 3717143 bp
Length : 1284 bp
Strand : +
Note : -

DNA sequence : 
TTGAACGAAAAAATTGCCGTCATCGGCCTCGGTTATGTGGGCCTGCCTGTCGCGATTGCGCTTGCCGAAAAATTCCCTGA
TGTGGTCGGCTTCGACATCAAGGCCTCCCGCGTCGCCGCGCTGAAGGCAGGCGAGGACGATACCCGGGAGATTTCTGCCG
AGCGGCTGCAGTCGAGCGGACTGCGTGTCAGCGGCGATATCGCGGATCTCAGGGATCGCGATATCTTCATCGTCGCCGTG
CCGACACCGATCGATCGGAACCGGCAGCCCGATCTGCAGCCGATGATTTCGGCCTCGCGCACGGTCGGCAAGGTTTTGCG
CAAAGGTTCGGTCGTCGTCTACGAATCCACCGTCTATCCCGGCGTCACCGAAGACGTCTGCGGCCCGGTGCTGGCGGAAG
TTTCCGGGCTGCGCCAGGGCGAGGATTTCCATGTCGGCTATTCCCCGGAACGCATCAATCCCGGCGATAAGGAGCACACC
TTCGAGCGCATCGTGAAGGTCGTCGCCGGCGATGATGCACAAACGCTGGAAAGGATCGCTGCGATCTATGGCGCTGTGGT
CGAGGCCGGCATCCACCGCGCCCCCAGCATCAAGGTGGCGGAGGCCGCCAAGGTGATCGAGAATACCCAGCGCGACGTCA
ATATCGCATTGATGAACGAGCTTTCGATCATTTTCGAGAAAATGGATATCCGCACCGCCGACGTGCTGAAGGCGGCGCGG
ACGAAATGGAATTTCCTGCCCTTCACCCCCGGCCTGGTCGGCGGCCACTGCATCGGCGTCGACCCCTATTACCTGACGGC
CAAGGCCGAAGAACTCGGCTATCACCCTGAAGTCATTCTTTCCGGCCGCCGCATCAATGACGGCATGGGCGCCTTCATTG
CCCAAAAGCTCATCAAGATGCTGGTCGCGGCGAAAAAGCCGATCAACGGCGCCCGGATCGGCATATTCGGCCTGACTTTC
AAGGAAAACGTGCCCGACCTGCGCAACAGCCGCGTTCCTGACATTATAAGCGAACTGCATCAGTTCGGCCTGGAACCGCT
GGTGCACGACCCGATGGCGAGCACCTCGGAGGCTGAGGAGGAATACGGCATAAAGCTCCGGGAATTGCGGGACTTCGGCA
AGCTTGATGCTATCGTGCTTGCCGTTCCGCACAAATCCTATCTGGCAGAAGGTGCAGCCACTATCCTCGATCTCTTGAGC
GAGAACGGAGTCGTCGTCGACGTGAAGGCAGCCCTCGATCGAGCCAATCCTTTGCTGGAAGATCATTCGGTCTGGAGCCT
GTAA

Protein sequence : 
MNEKIAVIGLGYVGLPVAIALAEKFPDVVGFDIKASRVAALKAGEDDTREISAERLQSSGLRVSGDIADLRDRDIFIVAV
PTPIDRNRQPDLQPMISASRTVGKVLRKGSVVVYESTVYPGVTEDVCGPVLAEVSGLRQGEDFHVGYSPERINPGDKEHT
FERIVKVVAGDDAQTLERIAAIYGAVVEAGIHRAPSIKVAEAAKVIENTQRDVNIALMNELSIIFEKMDIRTADVLKAAR
TKWNFLPFTPGLVGGHCIGVDPYYLTAKAEELGYHPEVILSGRRINDGMGAFIAQKLIKMLVAAKKPINGARIGIFGLTF
KENVPDLRNSRVPDIISELHQFGLEPLVHDPMASTSEAEEEYGIKLRELRDFGKLDAIVLAVPHKSYLAEGAATILDLLS
ENGVVVDVKAALDRANPLLEDHSVWSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-115 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-96 49
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-96 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_CH18215 YP_007335551.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 4e-97 49