Gene Information

Name : RTCIAT899_CH16525 (RTCIAT899_CH16525)
Accession : YP_007335215.1
Strain : Rhizobium tropici CIAT 899
Genome accession: NC_020059
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3336308 - 3337297 bp
Length : 990 bp
Strand : +
Note : -

DNA sequence :
ATGAGCGCGCCAGCTGAGAATATACGAGCGGGCAAGAGGGATCTGGGGCGAGTGCACTTGGAAGCCTTTCTGGAGATGAT
GAGCGCCGAGCGAGGTGCTGCCGTTAACACGCTGCAATCCTACGAGCGCGATCTCGACGATCTCCATTCATTTCTTTCCG
GGCAGGGCGTCCGCTTGACGGAGGCAAGCCCCGGTGATCTGGCCGCCTATCTTTCCAGCCTGTCGAGCCAGGGCTTCAAG
CCATCCTCCCAGGCACGCCGCCTCTCCGCCATGCGGCAGTTCTACAAGTTCCTCTATGCCGAAGGTCTGCGCACGGACGA
TCCCACCGGAATTCTCGATGCGCCGAAGAAAGGCCGCGCCCTTCCGAAGACGATGGGCGTCGATGAAGTGACGAAGCTTC
TGACCCAGGCGGAGCGGGAAGCGGCGCTCGAAGGGCCCGATCAGCTGCAGCGCCTGCGCATGCTGGTGCTTCTGGAAATG
CTTTACGCCACCGGCATGCGCGTCAGCGAGCTCGTCTCCCTGCCGGCGAAAGTCTTGGATCAGGAAGGACGCTTCCTGAT
GATCCGCGGCAAAGGCAACAAGGAGCGGCTGGTGCCGCTATCGCAGACCGCCATTTCGGCCCTGAAGGCCTATGGGCGTC
TGCAGGCCGCCATTTCAGCCAATGCCAAGCAGCCGCTGCCGGAAAGCCCCTGGCTTTTCCCCGCCGCGTCCAAGCAGGGG
TATCTGCCGCGGCAGGTCTTTGCACGCGATCTCAAGGATCTTGCCATCCGGGCCGGCCTGACGCCTTCGATGATTTCGCC
GCATGTGATGCGCCATGCCTTCGCGAGCCATCTTCTCGCCAACGGCGCAGACCTGCGCGTGGTGCAGGAACTTCTGGGGC
ATTCGGACATTTCGACGACACAAATCTACACACATGTACTGGAAGAACGCCTTCATCAGCTGGTCCAAACGCATCACCCC
CTTGCCAAACAGGCAAAAAAACAGGATTAG

Protein sequence :
MSAPAENIRAGKRDLGRVHLEAFLEMMSAERGAAVNTLQSYERDLDDLHSFLSGQGVRLTEASPGDLAAYLSSLSSQGFK
PSSQARRLSAMRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVDEVTKLLTQAEREAALEGPDQLQRLRMLVLLEM
LYATGMRVSELVSLPAKVLDQEGRFLMIRGKGNKERLVPLSQTAISALKAYGRLQAAISANAKQPLPESPWLFPAASKQG
YLPRQVFARDLKDLAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLHQLVQTHHP
LAKQAKKQD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 3e-42 42
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 3e-42 42