Gene Information

Name : RTCIAT899_CH15650 (RTCIAT899_CH15650)
Accession : YP_007335049.1
Strain : Rhizobium tropici CIAT 899
Genome accession: NC_020059
Putative virulence/resistance : Virulence
Product : ABC transporter, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3160568 - 3161554 bp
Length : 987 bp
Strand : +
Note : -

DNA sequence :
ATGAACGCCGTTCGCTTCCAGCAGGTGTCGCGCCATTTCGGCCAGGTCCGCGCTGTGGACCACGTCGATCTGGAGATCGC
GCCCGGCGAATTCTTCGCCATGCTCGGCCCTTCCGGTTCCGGCAAGACCACTTGCCTCCGGCTGATCGCGGGTTTTGAGC
AGCCGACAGGCGGGCATATCGAAATCTTTGGCGAAACCGCCGAAGGCGTGCCGCCCTATAGACGCAACGTCAACACGGTC
TTCCAGGATTATGCGCTCTTTCCGCATCTCAATATCCTCGACAACGTTGCCTACGGGTTGATGGTCAAGGGTATCGGCAA
GGCCGAACGGCTGAAGGCCGCCGAACAGGCGCTGGAGCTGGTGAAACTGCCCGGCTATGGCGCCCGCCGCCCCGGCCAGC
TCTCCGGCGGCCAGCGGCAGCGCGTGGCGCTCGCCCGCGCGCTGGTCAACAAGCCGAAAGTGCTGCTGCTCGACGAACCG
CTCGGCGCGCTCGACCTGAAACTGCGCGAGCAGATGCAGGAGGAGCTGAAGAGCCTGCAGCGCGCGCTCGGCATCACCTT
CGTCTTCGTCACCCACGATCAGGGCGAAGCCTTGTCCATGGCCGACCGCGTCGCCGTCTTCAACGACGGCCGCATCGTGC
AGCAGGGCACCCCGCACGACATCTATCAGCGACCAAAGACCCGCTTCGTCGCCGATTTCGTCGGCTCCTCCAATGTCATT
GCCCCCGAAACCATGTCGTCGCTCGGCGGCGAACGGCGTTGGGCCAGCCTGCGCCCCGAAGCCATCCGGTTGACTGAGGA
GAGCGGCGTGGCGGCGACCGTGAAAACGACAAGCTTTCTCGGTGCCGCTACCCGCCTCTCCGTCGAAGCAAACGGCACCC
GGCTGCATGTGACGGTACCCGCCGGACAACTAGCCCCGGATACCGGCGCATCCGTCCGCCTCGCATGGCTGCCTGCCGAT
GTGCACTACATGGATGACGCCGCATGA

Protein sequence :
MNAVRFQQVSRHFGQVRAVDHVDLEIAPGEFFAMLGPSGSGKTTCLRLIAGFEQPTGGHIEIFGETAEGVPPYRRNVNTV
FQDYALFPHLNILDNVAYGLMVKGIGKAERLKAAEQALELVKLPGYGARRPGQLSGGQRQRVALARALVNKPKVLLLDEP
LGALDLKLREQMQEELKSLQRALGITFVFVTHDQGEALSMADRVAVFNDGRIVQQGTPHDIYQRPKTRFVADFVGSSNVI
APETMSSLGGERRWASLRPEAIRLTEESGVAATVKTTSFLGAATRLSVEANGTRLHVTVPAGQLAPDTGASVRLAWLPAD
VHYMDDAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 2e-26 42
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 4e-26 41
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 6e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_CH15650 YP_007335049.1 ABC transporter, ATP-binding protein VFG1206 Protein 1e-30 42