Gene Information

Name : RTCIAT899_CH07030 (RTCIAT899_CH07030)
Accession : YP_007333355.1
Strain : Rhizobium tropici CIAT 899
Genome accession: NC_020059
Putative virulence/resistance : Unknown
Product : putative IS5 family transposase, IS1031 group, OrfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1444102 - 1444962 bp
Length : 861 bp
Strand : +
Note : -

DNA sequence :
GTGAAGTACGCGTTCATTGCTCTGCATTGCTTGCAGTTTTCGGTGCGGACGATGTGCCGCCTTCTGCGGGTTCATCCCAG
TGGGTTTTATGCCTGGCTGAAGAACCCGCTGAGCAGGCGAGCCAGCGAGGACAAGCGACAGACCGACCTGCTCCTGAAGG
CATGGGAAGAGAGCGGCAAGGTCTACGGTTATCGCAAGCTGCACGACGACCTTCTCGATCAGGGAGAGACATGTTGCCCG
AACCGGGTTGCGCGTCTGACCCGCCTTGCCGGGATCAAGGCGCAGATTGGCTACAAACGCCGTCCCGGCATCCACGGCGG
CAGGCCTTCGGTCGTCATCGACAACACGCTCGACCGGCAATTCGACGTGACGGCTCCAGACACTACCTGGGTGACGGACA
TCACCTACATCCGAACCTGCGAGGGCTTCGCCTATCTTGCCGTCGTCATCGATCTTTATTCGCGTCGTGTGATCGGTTGG
GCAATGCAGAGCCGCCAAACCACCGATGTCGTTCTACAGGCTCTGCTTATGGCCGTGTGGCGACGCAAGCCGAAGGAAAA
GGTGCTGATCCACTCGGACCAGGGCTCGCAGTTCACCAGCATGGACTGGGCCGCGTTCCTCAGGCATCACAATCTGGTTC
ATTCCATGAGCCGACGCGGCAACTGCCATGATAACGCGGTGGCCGAGAGCTTCTTCAATCTTCTCAAGCGAGAACGGATA
CGTCGCAGGGTCTACCGTTCACGCGATGAAGCTCGCCAGGACGTGTTCGACTACATCGAAATGTTCTACAACCCGAAACG
CAAACACGTCAGGAACGGGATGCTGTCGCCCGTCGAGTTCGAAAAGCAGCAGAAAATCTAA

Protein sequence :
MKYAFIALHCLQFSVRTMCRLLRVHPSGFYAWLKNPLSRRASEDKRQTDLLLKAWEESGKVYGYRKLHDDLLDQGETCCP
NRVARLTRLAGIKAQIGYKRRPGIHGGRPSVVIDNTLDRQFDVTAPDTTWVTDITYIRTCEGFAYLAVVIDLYSRRVIGW
AMQSRQTTDVVLQALLMAVWRRKPKEKVLIHSDQGSQFTSMDWAAFLRHHNLVHSMSRRGNCHDNAVAESFFNLLKRERI
RRRVYRSRDEARQDVFDYIEMFYNPKRKHVRNGMLSPVEFEKQQKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-42 44
tnpA AAD44733.1 TnpA Not tested SHI-2 Protein 4e-30 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-42 43
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-41 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-42 42
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-33 42
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_CH07030 YP_007333355.1 putative IS5 family transposase, IS1031 group, OrfB VFG1631 Protein 2e-42 42