Gene Information

Name : DESAM_21849 (DESAM_21849)
Accession : YP_007326223.1
Strain : Desulfovibrio hydrothermalis DSM 14728
Genome accession: NC_020055
Putative virulence/resistance : Virulence
Product : Two component, sigma54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2225046 - 2226455 bp
Length : 1410 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAATCCTGTAGGCATACTTATCGTAGATGACGAAATTGATTTTGCAACTGGAATTGCAAGGCTTATTCAGCGTTT
TTTTCCTCATGAAGAAATAATGACTGTGAATTCCGGTATTGAAGCTCTGAACATTTTGGATAAAAAACCGTTTGGCCTGC
TGCTTACTGATTTGAATATGCCGGGTATGGATGGTGCTGAGCTGCTTAAAAAAGCTATTGCCAATCGTCCTGATCTCGGT
GTGGTTATTTTGACTGCTTTCGGTACAGTCTCCACTGCGGTAAAGGCCCTGAAACTTGGGGCTTACGATTTTATCACTAA
ACCTGTTGAACCTGAAGCACTGCGACTGGTGGTTGAGCGGGGCATTGAAAGGTGTAATTTACTCGGGGAAAACAGCAGGC
TTAAAAAAGAGCTTTCCGAAAAGCGCGGGCGCGGTGAACTAATTGGTGACTGCCTTGCCATGCGCCGTTTGCAGGAACGC
ATTTCAGCGGTGGCGGAGTCGGATTATACAGTGCTTATCAGGGGAGAATCCGGAACCGGAAAGGAGCTTGTGGCCCGCAC
AATTCATCAACTCAGCAACCGTTCCAGCGGTCCGCTCATGACCGTCAATTGTCCGGCAATTTCAGATCAGTTACTTGAAA
GTGAACTCTTCGGGCATGTGAAAGGGGCTTTTACCGGTGCAAACCGTACGCGCAAGGGTATTTTTGTTAACGCCAACAAA
GGGACACTGCTGCTTGATGAAATCGGGGATATCACTTCGGGAATTCAGACCAAGCTGCTTAGAGTGTTGCAGGAAGGGGA
AGTGCGTCCTGTCGGTTCAAGTAATAATGTAAAGGTTGATGTGCGTATAATAGCATCAACAAACAGGAATCTTGAAGCTA
AGGTCGCGGACCGCAGTTTCAGAAGTGATCTGTATTATCGCTTGAACGTGCTGACTTTGCACGTGCCGACTCTTGGTGAG
CGCAAGGAGGATATTCCTCTTTTGGCCCGTCATTTTTTGAAAGCAACCTGCAAGGAGACTGGAGTGCCTGCTAAAGAATT
ATCCACTGACGCAGTTGTTTACCTTTCCATGCGCAAATGGCCCGGCAATATCAGGGAGCTTCAGAATTTTATTCGCAGGT
TGACTGTTTTTTCCCCCGCGGACGTAATTGAAATGGCGCAGATACGCATGGTTGAATCAATTGACGGTTCCCCGCAGGAT
ATTGTCCGTTCAATTTCTCCATACAAGGAAGCTAAAGAGAAGCTGGTGGATGACTTTACGCGGACTTACACCACTGAGCT
TCTTGGCAACTACAAAGGTAATGTCTCCGAGGCCGCAAGGCAGAGTGGACTTTCGCGTATGGCTTTGCTCAAGATACTTA
AACGGCTTGATATTGATGCTGATGAATTCAGACATGGCGGCGCAGGTTAG

Protein sequence : 
MKNPVGILIVDDEIDFATGIARLIQRFFPHEEIMTVNSGIEALNILDKKPFGLLLTDLNMPGMDGAELLKKAIANRPDLG
VVILTAFGTVSTAVKALKLGAYDFITKPVEPEALRLVVERGIERCNLLGENSRLKKELSEKRGRGELIGDCLAMRRLQER
ISAVAESDYTVLIRGESGTGKELVARTIHQLSNRSSGPLMTVNCPAISDQLLESELFGHVKGAFTGANRTRKGIFVNANK
GTLLLDEIGDITSGIQTKLLRVLQEGEVRPVGSSNNVKVDVRIIASTNRNLEAKVADRSFRSDLYYRLNVLTLHVPTLGE
RKEDIPLLARHFLKATCKETGVPAKELSTDAVVYLSMRKWPGNIRELQNFIRRLTVFSPADVIEMAQIRMVESIDGSPQD
IVRSISPYKEAKEKLVDDFTRTYTTELLGNYKGNVSEAARQSGLSRMALLKILKRLDIDADEFRHGGAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-65 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-65 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DESAM_21849 YP_007326223.1 Two component, sigma54 specific, transcriptional regulator, Fis family BAC0467 Protein 2e-74 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DESAM_21849 YP_007326223.1 Two component, sigma54 specific, transcriptional regulator, Fis family VFG1214 Protein 6e-67 42
DESAM_21849 YP_007326223.1 Two component, sigma54 specific, transcriptional regulator, Fis family VFG1249 Protein 4e-62 41