Gene Information

Name : gspE (DESAM_20910)
Accession : YP_007325298.1
Strain : Desulfovibrio hydrothermalis DSM 14728
Genome accession: NC_020055
Putative virulence/resistance : Virulence
Product : general secretory pathway component, cryptic
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1246877 - 1248358 bp
Length : 1482 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter

DNA sequence : 
TTGAGTAAATCTTATGATTTGAACCTCGTTCCGCGCGAAGTGGTGGATATGTTTTTGACTTTCCCTCAACGCAGTGAATT
CATACCTGTTGAAGTTGGCGAGAAAGAAATCAAAATACTTCTTCAAAATGAAAGTTCCTTACCTATGGCTGACTTTCTTG
CCTGGAAGATTGGGAAGAAAGTTAAAACAGAAGTTGTTGATGAGGAATTTTTTTTCCCGCTTCTTGAGCAGGCACTTACC
GTCTGGGAAGAGGAAAGCGCGCTTGAATCTGATTCCGATGAGGAAGACAGTGAAGACGGGCAGGATCTTTTGGGCTGGTC
ACATGATGATGCGCCGATTGTTCGTTTAGTTAACAAAACTTTGCATCAGGCTATTTCTACCGGCGCAAGTGATGTTCATT
TTGAGGGGCAAGGAAACGGGTTTGTTGTCCGTTATCGTCAGGACGGCGTCTTAAAGGCTGTTAAAAGATTAGACAAAGGG
TTACATCCTACGGTCATCGCACGTATTAAAGTTATGGGCGAGATGGACGTGGCAGAAAGCCGTAAACCGCAGGATGGCCG
AATTTTTCTTAAACTAGGGCAGAAAGAAGTTGATGTCCGTGTTTCCACCATTCCCACCATGAACGGTGAGAAGGCTGTGC
TGCGTATTCTGGACAGATCGAAAAACATTTTGAATTTAGAAGATCTCGGCCTTAAGGGTCAAGATCTTGCGCTTTTTAGG
AAGGTTCTCGCCCAGCCGCATGGAATTGTGTTGGTAACAGGGCCTACAGGATCTGGTAAAACAACCAGTTTATATGCCGG
TCTTAGTGAACTGCCGCGTGATGATAAAAATATTGTTACTGTAGAAGATCCTGTTGAATATCAGCTTTCCGGAATCAATC
AGGTTCAGGTAAATAAAGCGGCAGGAATGACTTTTGCCACAACAATTCGATCATTTCTCAGGCAGGACCCTGATATTATT
CTGGTTGGTGAGATTCGAGATCAGGAAACTGCCAGCACCGCTGTTCAAGCTTCTCTCACCGGCCACCTTGTGCTTTCAAC
CCTGCACACTAATGATGCCGCAACTGCTGTAACCCGTATGCTTGATATGGGGATCGAACCGTTTCTTTTGGCCTCCTCCT
TATCGTTGGTATTGGGGCAGAGACTTGTGCGTGTCAATTGCAGGCATTGCAGCAGAGAGGTTGAGGTTTCTGAAAATACG
TACAAACTTTTCGATGACCGAGAAGATCTTCCAGCTCGTCAGACAGTTGGCGCAGGATGTGAGCATTGTAACTTCACGGG
GTTTAGCGGCCGGCGTGGAGTCTATGAGCTTATACCCGTAACTGAAGATATGCGCGGTTTAATAATGGACGCTGTTTCTT
CTGACACTATCAAAGCCTACGCAAAAAAAATGGGCCGTGAAACTATGGTTGACCATGGAATAAGACTTGTTCAGGAAGGA
GTTACTACGCTTGAAGAGGTTGTCAGGGTAACCAAGCTTTGA

Protein sequence : 
MSKSYDLNLVPREVVDMFLTFPQRSEFIPVEVGEKEIKILLQNESSLPMADFLAWKIGKKVKTEVVDEEFFFPLLEQALT
VWEEESALESDSDEEDSEDGQDLLGWSHDDAPIVRLVNKTLHQAISTGASDVHFEGQGNGFVVRYRQDGVLKAVKRLDKG
LHPTVIARIKVMGEMDVAESRKPQDGRIFLKLGQKEVDVRVSTIPTMNGEKAVLRILDRSKNILNLEDLGLKGQDLALFR
KVLAQPHGIVLVTGPTGSGKTTSLYAGLSELPRDDKNIVTVEDPVEYQLSGINQVQVNKAAGMTFATTIRSFLRQDPDII
LVGEIRDQETASTAVQASLTGHLVLSTLHTNDAATAVTRMLDMGIEPFLLASSLSLVLGQRLVRVNCRHCSREVEVSENT
YKLFDDREDLPARQTVGAGCEHCNFTGFSGRRGVYELIPVTEDMRGLIMDAVSSDTIKAYAKKMGRETMVDHGIRLVQEG
VTTLEEVVRVTKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 9e-88 50
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 7e-88 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspE YP_007325298.1 general secretory pathway component, cryptic VFG0182 Protein 1e-91 52
gspE YP_007325298.1 general secretory pathway component, cryptic VFG1876 Protein 2e-88 50
gspE YP_007325298.1 general secretory pathway component, cryptic VFG2048 Protein 3e-88 50
gspE YP_007325298.1 general secretory pathway component, cryptic VFG2426 Protein 6e-70 45