Gene Information

Name : Halha_0669 (Halha_0669)
Accession : YP_007314735.1
Strain : Halobacteroides halobius DSM 5150
Genome accession: NC_019978
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 645622 - 646386 bp
Length : 765 bp
Strand : +
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence : 
ATGAAAGCTAAATATCAGTTAACCGGGATACTAATTATAGTTATTTTATTGGTAGTACAGGCAAGTGCTATAGCAGCGCC
CCGATTTGAAATTCCCAGTATAAAACTTCAGGTAGGAGATGATGGTTCTCAACCACAGGAGTTAGCACTATCACTAAAGA
TATTATTGTTGCTAACTATTTTAACATTAGCTCCTGCTATTTTAATATTATTAACTTCATTTACTAGAATTATTGTCGTC
TTATCTTTTTTACGTCGGGCTTTAGCCACACAAAGGATGCCCCCAAACCAAGTTTTGATTGGTTTAGCAATTTTTTTAAC
GATTTATATTATGGCACCTGTGGGCCAAGATATTAATCAAAATGCTTTACAGCCTTATTTGGCTGAAAAGATAGACCGAG
GAACGGCTTTTGATCGGACAATAAAACCATTACGTAGATTTATGTTTAAGCAAACTAGAGAGAAAGATATTGCTTTATTT
GTTAATTTATCAAATTCTAAGCGTCCTAAGGGGCCTAAAGAACTATCAACTTATGTTCTAATTCCTGCTTTTATAATTAG
TGAATTAAAAACTGCATTTCAAATTGGGTTTATGATTTACTTACCGTTTGTGGTAATTGATATGATTGTAGCTAGTACTT
TAATGTCTATGGGAATGATGATGTTGCCTCCAGTTATGATTTCTTTACCTTTTAAGATTTTATTATTTGTATTAGTAGAT
GGCTGGTACTTAGTCATAAAATCATTGGTTGAAACTTTTAAATAA

Protein sequence : 
MKAKYQLTGILIIVILLVVQASAIAAPRFEIPSIKLQVGDDGSQPQELALSLKILLLLTILTLAPAILILLTSFTRIIVV
LSFLRRALATQRMPPNQVLIGLAIFLTIYIMAPVGQDINQNALQPYLAEKIDRGTAFDRTIKPLRRFMFKQTREKDIALF
VNLSNSKRPKGPKELSTYVLIPAFIISELKTAFQIGFMIYLPFVVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLVD
GWYLVIKSLVETFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-23 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-29 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-22 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-22 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-22 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-29 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-29 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-25 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-29 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-29 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-29 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-25 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-25 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-28 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-24 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-24 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-24 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG1259 Protein 6e-44 58
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-42 57
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG2338 Protein 7e-41 55
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-41 53
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-28 43
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-28 42
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG0188 Protein 6e-27 42
Halha_0669 YP_007314735.1 flagellar biosynthetic protein FliP VFG0519 Protein 1e-24 41