Gene Information

Name : Halha_0611 (Halha_0611)
Accession : YP_007314677.1
Strain : Halobacteroides halobius DSM 5150
Genome accession: NC_019978
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 597443 - 598288 bp
Length : 846 bp
Strand : +
Note : PFAM: ABC transporter; manually curated; non-canonical start codon

DNA sequence : 
ATTATAAAATTAAAGACAAAAGATTTAAATGTTAGTTATGGTGATGATTTAATAGTTAAAGGTCTTAATATTGAAATTGC
AGCTAAAAAAATCACAGCAATTATAGGTTCTAATGGCAGTGGCAAATCAACATTATTAAAAGCAATGACAAGAATCATCT
CCTATCAATCAGGAAAAGTTGTTTTAGATGGTAAAAATATTTCCCAAGAGAATACAAATGCACTTGCTAAAAAGATGGCT
ATTCTTCCTCAAACTCAAGAAACCACAAGTGGTTTGACAGTTGGAGAATTAGTATCTTATGGCCGGTTTCCTTATCAGAG
TAGTTTAGGAAGACTGACAGAGAAGGATTATAATGTTATCAATTGGGCACTTGAAGTTACAGGAACAGAGAAATTTAAAT
ATCAGACAGTAGATTTATTATCAGGTGGGCAAAGACAGCGCGTCTGGATTGCAATGGCACTAGCCCAGGAGACAGATGTA
ATATTTTTAGATGAACCTACAACCTATTTAGATATGGCTCATCAGTTAGAGGTTTTAGAATTACTCCAGAGATTAAATGA
TGAGCAGGAACGTACAATCATTATGGTACTTCATAATTTAAATCAAGCGGCTCGCTTTGCTGACCACATAATTGCTTTAA
AAGAAGGAAAAGTTGTAAAATCAGGGGAGTGTAAGGAAGTAATTACCCCTAATGTACTTAAGAAAGTATTCAATATTGAT
GCTAAAATTGGAGAAGATCCAAGAACAGGTAAACCAATGTGTATTACTTATGACTTAATAAATGGAGGTAATAATAATGA
AAAAAATAATAATCACCACTATGCTTATGCTAGCACTGGTTTTTAG

Protein sequence : 
MIKLKTKDLNVSYGDDLIVKGLNIEIAAKKITAIIGSNGSGKSTLLKAMTRIISYQSGKVVLDGKNISQENTNALAKKMA
ILPQTQETTSGLTVGELVSYGRFPYQSSLGRLTEKDYNVINWALEVTGTEKFKYQTVDLLSGGQRQRVWIAMALAQETDV
IFLDEPTTYLDMAHQLEVLELLQRLNDEQERTIIMVLHNLNQAARFADHIIALKEGKVVKSGECKEVITPNVLKKVFNID
AKIGEDPRTGKPMCITYDLINGGNNNEKNNNHHYAYASTGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-47 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-47 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-46 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-51 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-44 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halha_0611 YP_007314677.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component BAC0164 Protein 4e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halha_0611 YP_007314677.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG1042 Protein 4e-46 44
Halha_0611 YP_007314677.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG0925 Protein 5e-47 43