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Name : Halha_0349 (Halha_0349) Accession : YP_007314447.1 Strain : Halobacteroides halobius DSM 5150 Genome accession: NC_019978 Putative virulence/resistance : Unknown Product : Retron-type reverse transcriptase Function : - COG functional category : - COG ID : - EC number : - Position : 364126 - 365967 bp Length : 1842 bp Strand : + Note : PFAM: HNH endonuclease; Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) DNA sequence : ATGACTGCGTTAAGGAAGGAACAAGTTGAGAATCCTAAGAAACAAAAATTAAGAAATAATGAGTATTACAATACCCAAGA TATTCAAGATATGCTATATAGGTATAGCAAAAAAGGTTATGATTTTAAGAATCTAATGCACCATATAAAGTCAAAGGATA ATATCCTACTGGCTTACCGTAACATCAAGAAAAATACTGGTAGTAAGACTAGAGGTACTAATAATAAGACTATTAAGGAT TTGGAAGAACTAACCACACAGAAACTTGTAGACTATGTAAGAAATAGACTTGAGTATTACATCCCACAATCTGTAAGGAG AGTTTATATTCCAAAGCCAGACGGTAGGAAAAGACCGCTAGGAATACCCACAATCGAAGATAGATTAATACAACAATGTA TTAAACAGGTTTTAGAACCTATTTGTGAGGCAAAGTTTCATAATCACTCATACGGTTTCAGACCTAACAGGTCAACCAAA CATGCCATTGCTAGAACAATGCGTTTAATAAACCAAAGCAAGTTACATTATGTAGTAGATGTTGATATAAAAGGGTTTTT CGATAATGTTGACCACGCCAAACTAAAGAAACAAATGTGGTCTATGGGTATAAAAGATAAAAAGTTAATCTCTATAATAG GTAATATGCTCAGAGCAGAAATTGAAGGTGAAGGCATCCCAGATAAAGGCACACCACAAGGTGGAATTATCTCACCTTTA CTGTCTAATATAGTATTAAACGAATTAGACTGGTGGGTATCAAATCAATGGGAGACATTTGAGACTGACTTCAAATACAA CCAAAAATCTAATAAGTATCAAGCATTGAAGAAAAGGTCAAACCTTAAGGAAGTATACATTGTAAGGTATGCCGATGATT TCAAGATAATGTGTAGAGATTATGAAATTGCTAGTAAGATTAAAGTAGCCACTATTCAATGGCTAAAAGAAAGATTAAAC CTTGATGTGAGTAAAAAGAAAACTAAAATCACCAACCTTAAGAGAAGTTACACAAAATTTTTGGGTATTAAATTGAAAGT TGTTGAAAAAGGCAATAAATATGTATGCAAATCTAGAATAGCCAATGGAGTTAAAAAGAAACTTGCTGATAAACTCAAGC GTCAGATTAATAATATAAAACAAGAAACAACACCACAACAAGTGTCTAAGTTAAATTCAATGATACTTGGTATGCACAAT TACTACTCTATGGCTACACACGTGAATATTGATTTTTCAGAGATTGCCTTTTTAGTCAATAGAACCTTAGAGAATCGTCT TAGTCCGAATAGAAAGGGAACTGAGTCAAAAGCTTTCAAGAAACTCTATGGAAGTTATAACTATAAACCTTATTGTGTGA CAGGTATCAAAATATTCCCAATAGCAGGTGTAACCACAAGTCCTCCAATGAATTTTAGTCAGGACATATGTGATTATACA CCAAAAGGTAGAGAAAAGATACACAAGAAACTAAAAAGTGTATCACCAGTTGTACAAAGATATTTGGTTGAAAACCCTGT ACAGGGTCAGTCAGTTGAGTATAATGACAATCGAATTGCTAGATATTCAGGGCAGAATGGTTGTTGCTTTGTAACTGGTA AACCTCTGACAATAGGTAATATTGAGTGTCATCACAAAAAGCCACGCAGTATGGGTGGTAAGGACACATACAGAAATTTA TGTTTAGTAACAAAAAATGTCCACAAATTGATACACTCAACTAAATCTGAAACAATTAAACGTTATTATGATAAGGTGAA AGGTTACTTTGATGAAGAAATCCTAAGTAAGCTCAATAAATTCCGAACTAAGGCAGGAAATGATTGTATCGAACTATCTT AA Protein sequence : MTALRKEQVENPKKQKLRNNEYYNTQDIQDMLYRYSKKGYDFKNLMHHIKSKDNILLAYRNIKKNTGSKTRGTNNKTIKD LEELTTQKLVDYVRNRLEYYIPQSVRRVYIPKPDGRKRPLGIPTIEDRLIQQCIKQVLEPICEAKFHNHSYGFRPNRSTK HAIARTMRLINQSKLHYVVDVDIKGFFDNVDHAKLKKQMWSMGIKDKKLISIIGNMLRAEIEGEGIPDKGTPQGGIISPL LSNIVLNELDWWVSNQWETFETDFKYNQKSNKYQALKKRSNLKEVYIVRYADDFKIMCRDYEIASKIKVATIQWLKERLN LDVSKKKTKITNLKRSYTKFLGIKLKVVEKGNKYVCKSRIANGVKKKLADKLKRQINNIKQETTPQQVSKLNSMILGMHN YYSMATHVNIDFSEIAFLVNRTLENRLSPNRKGTESKAFKKLYGSYNYKPYCVTGIKIFPIAGVTTSPPMNFSQDICDYT PKGREKIHKKLKSVSPVVQRYLVENPVQGQSVEYNDNRIARYSGQNGCCFVTGKPLTIGNIECHHKKPRSMGGKDTYRNL CLVTKNVHKLIHSTKSETIKRYYDKVKGYFDEEILSKLNKFRTKAGNDCIELS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 2e-125 | 48 |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 3e-94 | 42 |
