Gene Information

Name : Halha_1791 (Halha_1791)
Accession : YP_007315820.1
Strain : Halobacteroides halobius DSM 5150
Genome accession: NC_019978
Putative virulence/resistance : Virulence
Product : type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1822379 - 1824052 bp
Length : 1674 bp
Strand : -
Note : PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E

DNA sequence : 
ATGATTAAAAAGAAAAGGTTAGGGGATATTTTGGTAGAGGCCGGTTTTATTACTGAAGAAGAATTGAATGAAGCATTAAA
AAGGCAGAAAAATACTGAGCAACGATTAGGGAATATATTAAAAAGGATGGGGTTGGTAACTGATGAGAGTGTAATGGAGG
CATTAGAATTTCAGTTAGGAATTCCCCGGCTAGATTTAAAACAAATGATAATTGATCCTGAAGTTATTAATATGATTCCT
AAATCTTTAGCTGAACGACATAAGGCTATTCCAGTAAAACAAAAAGATAATGCCTTAACTGTAGCTATGGCTGATCCTTT
GGATATTTTAGCAATTGATGATATTAGGATAAAAACTAATTGTGAAGTAATTCCAGGTATCTCTAGTGAGGAAGAAATTC
AAAATGCTATAAATCAGTATTTTGGTGAGACTGATATTGTTAATGAATTTATGGAGGATGTAGATTTAAAAATAGATAGG
ATTAATTCAGGCCAATTAGAAGATAATAATTTACAGCAGATGGTAGAAGATGCTCCAATAGTTAGATTGGTAAATAGCAT
TATTGCTAGAGCAGTTAAAGCAAGAGCTAGTGATATTCATATAGAGCCGGATGAAGATCAAGTGCAAGTAAGATATAGAA
TTGATGGGATACTACATACAGAAATGAATATACCTAAGCAGACACTTTCGGCTCTAGTTTCTAGAATAAAGATTATGGCT
GAAATGGATATAGCTGAAAGAAGATTACCTCAAGACGGAAGAATTCAGATGAAATTAGCTAATACTAAGGTTGATTTAAG
AATTTCCACTTTACCTACTGTAGAAGGTGAGAAGGTTGTTATTAGAATTTTAGATAAAGATAATGTAATGTTAAGTATTG
ATGAGTTAGGCTTATCTGTTGAGGCTAAACCTGCTTTTAAGAAGATGATTAATCAACCTCATGGTATGTTATTGATAACT
GGGCCAACTGGCAGTGGTAAGACGACGACCCTTTATTCTGCTTTGAATTTTATGGATGCTAGTAGTAAAAATATTATTAC
TGTAGAGGATCCAGTAGAATATAAATTAAAAGGGGTTAATCAAGTACAGACTAATTCTAAAGCAGGACTTAGTTTTGCTA
ATGGTTTACGATCTATTTTACGTCAAGACCCGGATGTAATAATGATAGGGGAGATTAGAGATAAGGAGACAGCAAAGATA
GCTATTCATGCTGCTATGACTGGTCATCTAGTATTAAGCACTTTACATACTAATCAATCTGCAGGAGCTCTAACAAGATT
AATAGATATGGGGATTGAACCTTATTTGGTTGCTTCTTCAGTGCTAGGTGTTATAGCTCAGAGATTAGTAAGAAAGATTT
GTGATAATTGTAAAGTAGAAAGCGAAAAGTTACTTCCTCCTAAAACTTTAGAAGTAAAAGATAGTTTTAAACATTATCAA
GGGGAAGGATGTAGAAGCTGTAATCAGGCAGGGTATAAAAGAAGGACTGCAATATACGAATTGTTAGAGGTAGAAGCTAA
AATAAAAGAATTAGTAGTAGAAAAAGTATCAGCAGCTAAAATTGAATCAGTAGCAAAAACAAAAGGTATGAATACTCTTG
AAGATGCTGCTTTAAAAAAGGTAGAAAAAGGGATAACTAGCTTAGAAGAGGCGATGAGAGTCACTAAAATTTAG

Protein sequence : 
MIKKKRLGDILVEAGFITEEELNEALKRQKNTEQRLGNILKRMGLVTDESVMEALEFQLGIPRLDLKQMIIDPEVINMIP
KSLAERHKAIPVKQKDNALTVAMADPLDILAIDDIRIKTNCEVIPGISSEEEIQNAINQYFGETDIVNEFMEDVDLKIDR
INSGQLEDNNLQQMVEDAPIVRLVNSIIARAVKARASDIHIEPDEDQVQVRYRIDGILHTEMNIPKQTLSALVSRIKIMA
EMDIAERRLPQDGRIQMKLANTKVDLRISTLPTVEGEKVVIRILDKDNVMLSIDELGLSVEAKPAFKKMINQPHGMLLIT
GPTGSGKTTTLYSALNFMDASSKNIITVEDPVEYKLKGVNQVQTNSKAGLSFANGLRSILRQDPDVIMIGEIRDKETAKI
AIHAAMTGHLVLSTLHTNQSAGALTRLIDMGIEPYLVASSVLGVIAQRLVRKICDNCKVESEKLLPPKTLEVKDSFKHYQ
GEGCRSCNQAGYKRRTAIYELLEVEAKIKELVVEKVSAAKIESVAKTKGMNTLEDAALKKVEKGITSLEEAMRVTKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 8e-95 48
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 6e-95 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halha_1791 YP_007315820.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0182 Protein 3e-95 49
Halha_1791 YP_007315820.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG1876 Protein 7e-94 48
Halha_1791 YP_007315820.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG2048 Protein 1e-93 48
Halha_1791 YP_007315820.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG2426 Protein 5e-84 45
Halha_1791 YP_007315820.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0112 Protein 9e-90 43
Halha_1791 YP_007315820.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG1880 Protein 1e-89 41