Gene Information

Name : Halha_0154 (Halha_0154)
Accession : YP_007314261.1
Strain : Halobacteroides halobius DSM 5150
Genome accession: NC_019978
Putative virulence/resistance : Virulence
Product : ATPase with chaperone activity, ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 161134 - 163569 bp
Length : 2436 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif

DNA sequence :
ATGCTTTTTGGTAGATTTACTGAGAGGGCCAAGGAAGTAATGTCCTTTTCGCAAAAAGAAGCGCAAAATTTAGGACATAA
TTATGTGGGGACAGAACACTTATTATTAGGTTTGCTAAAAGAAGGAGAAGGAATAGCAGCTAAAGTTTTAAAAAAGAACA
AATTACAATTAGATGATTTAAGAAATAAAATTAAAGATATGATTGGAGAATCTGAGGGCCAATTAAATGCTAAGACTCTT
TCTTTTACTCCAAGAACCAAAAAAGTATTAAATCTTTCTTCAGAAGAAGCAAGAAGATTAGGACATAATTATGTAGGAAC
AGAACATTTATTATTAGGTTTATTAAAAGAAGGCGAAGGAGTAGCAGCACGAATATTAAAAAAAGAAGGATTAGAGTTTG
ATAAGATTAAAAAGCAGGTGGTTAATATGTTAGGAGGAGCCAAAAAGAAGAATAATGGATATGGTAAATATAAGTCTGGT
CGTCATAAGGGGAAATTAGATCAATATAGTCGTGATTTGACGCAACTTGCAGCTGAAGGAAAACTTGATCCAGTTATAGG
TAGAAATAAGGAAATAAAGCGGGTTATTCAAATTTTAAGTAGACGTAGAAAGAATAATCCAGTTTTAATTGGAGAACCAG
GTGTTGGTAAGACTGCCATTGCTGAAGGACTAGCCCAAAGAATTGCGGAGGAAGAAGTTCCAGAAACATTAGTGAACAAA
CGAATTTTAGCTTTGGATTTAAGTTCTATGTTAGCAGGTTCAAAATATAGAGGGGAATTTGAGAAGCGTTTGAAAGCAAT
AATGAAAGAAATTTCAGAGTCTGGAGATGTAATTTTATTCATTGATGAATTGCATAATTTAGTAGGAGCCGGAGGAGCCG
AAGGAGCTATAGATGCTGCTAATATTTTAAAACCTGCTTTAGCTAGAGGAGAATTACAGACTATTGGAGCTACAACATTA
GATGAGTATAGAAAGCATGTAGAAGAAGATGCAGCTTTAGAACGTAGATTTCAATCAATTTTGGTAGAAGAGCCAACTAT
TGAAGATACAGTGAAAATTTTAAAAGGATTACGTGATGTTTATGAAGCTCACCATAGAGTGAAGATTACAGATGATGCTA
TTATGGCAGCAGCTGAGCTATCCCACCGTTATATCAATGATCGTTTCTTACCTGATAAAGCAATAGACTTAATTGATGAA
TCAGGTTCTCAAGCTAGACTACAAGAAAATACCGCCCCAAATGAGTTAAAACAATTAAGTAAAAAACTTGAAAGAATAGA
ACAGGAAAAAGAAGCTGCTATTGAAGCTCAAGAATTTGAAGAAGCAGCAGATTTGCGTGATCAAGAACAACAAATTAAAG
ATCAGTTAGAAGAGATTAAGACAGAGTGGAAGAATGAAAAAGGAATGAATGAGACAGTAATTACTAAGGAGAATATTGCA
GAAATTGTTTCTGATTGGACTGGAGTTCCAGTTACTAAGTTGGCCCAAGAAGAATCAGAGCGTTTACTTAATTTAGAAGC
TGAATTGCATGAGCGAGTTGTGGGCCAAGATGAAGCAGTTGAATCTGTAGCTCAAGCTATCAGAAGGGCTAGAGCTGGAT
TAAAAGATCCCAAACGTCCTATTGGCTCTTTTATTTTCTTAGGGCCAACTGGAGTAGGAAAAACAGAATTAGCTAAAACT
TTAGCTGAGTCAATGTTTGATGATGAAGATGCTATGATTAGAGTTGATATGTCTGAATATATGGAGAAACATGCTGTTTC
TAGATTAGTAGGTGCTCCTCCAGGATATGTAGGACATGATGAAGGTGGACAGTTAACAGAAGAGGTTAGACGTCGTCCTT
ATTCAGTAATCTTATTAGATGAGATTGAAAAAGCCCATCCGGAAGTTTTTAATGTTTTATTACAGCTTTTAGAAGATGGT
CAACTTACTGATGCTCAAGGAAGAACGGTTGATTTTAAGAATACTGTAGTAATTATGACTTCTAATGTAGGAGCTGATTT
AATTCAAAATAATACTGGAGGACTTGGATTTAAGTCCCCAGAAAATATTGATACAGAGTATGAAGATATGAAAGAAAAAG
TTATGGGAAAAATGAAGGATACTTTCAGACCAGAATTTCTTAATAGATTAGATGAGATAATTGTATTCCATTCTCTAACT
GAAGAAGAGATCAAAGAAATTGTTGACTTTATGTTACAAGATTTAGAAGAGAGAATTATAAATAAAGATCTAAAATTAGA
TGTTACTGAGCCAGCAAAAGAATTACTTGCTGAAAAGGGTTATGATAAAGAGTTTGGAGCAAGACCACTCCGTAGAACAA
TCAGACGCATGATTGAGAATCCTTTATCCGAAAGATTACTAGCTGGTAAGTTTGAAGAAGGAGACACAATTAAGATTAAT
GCTCAAGAAGGAGAACTTAAATTTAGTAAATTATAA

Protein sequence :
MLFGRFTERAKEVMSFSQKEAQNLGHNYVGTEHLLLGLLKEGEGIAAKVLKKNKLQLDDLRNKIKDMIGESEGQLNAKTL
SFTPRTKKVLNLSSEEARRLGHNYVGTEHLLLGLLKEGEGVAARILKKEGLEFDKIKKQVVNMLGGAKKKNNGYGKYKSG
RHKGKLDQYSRDLTQLAAEGKLDPVIGRNKEIKRVIQILSRRRKNNPVLIGEPGVGKTAIAEGLAQRIAEEEVPETLVNK
RILALDLSSMLAGSKYRGEFEKRLKAIMKEISESGDVILFIDELHNLVGAGGAEGAIDAANILKPALARGELQTIGATTL
DEYRKHVEEDAALERRFQSILVEEPTIEDTVKILKGLRDVYEAHHRVKITDDAIMAAAELSHRYINDRFLPDKAIDLIDE
SGSQARLQENTAPNELKQLSKKLERIEQEKEAAIEAQEFEEAADLRDQEQQIKDQLEEIKTEWKNEKGMNETVITKENIA
EIVSDWTGVPVTKLAQEESERLLNLEAELHERVVGQDEAVESVAQAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELAKT
LAESMFDDEDAMIRVDMSEYMEKHAVSRLVGAPPGYVGHDEGGQLTEEVRRRPYSVILLDEIEKAHPEVFNVLLQLLEDG
QLTDAQGRTVDFKNTVVIMTSNVGADLIQNNTGGLGFKSPENIDTEYEDMKEKVMGKMKDTFRPEFLNRLDEIIVFHSLT
EEEIKEIVDFMLQDLEERIINKDLKLDVTEPAKELLAEKGYDKEFGARPLRRTIRRMIENPLSERLLAGKFEEGDTIKIN
AQEGELKFSKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halha_0154 YP_007314261.1 ATPase with chaperone activity, ATP-binding subunit VFG0079 Protein 0.0 60
Halha_0154 YP_007314261.1 ATPase with chaperone activity, ATP-binding subunit VFG0080 Protein 1e-151 51