Gene Information

Name : VPBB_A1384 (VPBB_A1384)
Accession : YP_007301413.1
Strain :
Genome accession: NC_019971
Putative virulence/resistance : Virulence
Product : C4-type zinc finger protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1563080 - 1563811 bp
Length : 732 bp
Strand : -
Note : Similar to RIMD VPA1516 putative two-component response regulator

DNA sequence : 
ATGGAACGGCATACAACCAACGTGGTGGCGAACATATTGTTGATTGAAGACGATGATGACTTGGCCGAACTGGTTCAAAT
GCATCTCAAGTTTCAGGGGCATCAAGTCAGTCGAGAATCCAGCGTTGCAGCGGGCAGAAATACTTATCAGCAGCAGTCGT
TTGATTTGGTGATCCTCGACAGAGGTTTACCCGATGGTGATGGTTTAGATATCTGCCATCACTTGCGTCAACAACAAGAT
TGGACACCAGTTTTGATGTTGACTGCAAGAGACGGTGAGATGGATAAAGTGGATGGGTTGGAAGCTGACGTCGATGATTA
CATCACAAAGCCGTTTAGTGTTTTAGAGTTTCAAGCTCGGGTGAGAAATGTACTTCGGCGCGTTAATCAAGTTGCTGAAA
AGCCGACTCCAGAGCGAGCAGAAGAAGGGGCGCTTAACTTTGGTGACTTGAAGATCATTCCCCAATTGCATCAGGTTTCG
CTCAACGATAAAGACGTCGCTCTGACGGCAACCGAATTTACCTTGCTACAGTTTCTCGCCACTCGTCCCGGTCGAGTCTA
CAGTAAGGACGAGCTGTTGGATCATGTCTGGAACACCAATCATGCTGGGTACCATCACACGGTTTGTAGCACCATTAATC
GCTTGCGCAGTAAGCTGTCGTTGTCGGACTCAGAGCATCATTTTATTCAAACGGTTTGGGGTGTTGGGTACAAATTTCAG
CCGCGCCCATAA

Protein sequence : 
MERHTTNVVANILLIEDDDDLAELVQMHLKFQGHQVSRESSVAAGRNTYQQQSFDLVILDRGLPDGDGLDICHHLRQQQD
WTPVLMLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQVAEKPTPERAEEGALNFGDLKIIPQLHQVS
LNDKDVALTATEFTLLQFLATRPGRVYSKDELLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGYKFQ
PRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-26 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein HE999704.1.gene2815. Protein 5e-27 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_002952.2859905.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_007622.3794472.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_002745.1124361.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_009782.5559369.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_002951.3237708.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_002758.1121668.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_009641.5332272.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_013450.8614421.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_007793.3914279.p0 Protein 2e-21 42
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein NC_003923.1003749.p0 Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein VFG1563 Protein 7e-27 41
VPBB_A1384 YP_007301413.1 C4-type zinc finger protein VFG1702 Protein 5e-27 41