Gene Information

Name : Mycsm_06423 (Mycsm_06423)
Accession : YP_007295979.1
Strain : Mycobacterium smegmatis JS623
Genome accession: NC_019966
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6379233 - 6379904 bp
Length : 672 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGAAAGTCGAGCTCCCGCCCGCGCTGGAGGCGCGCTCGCTCTACCGGTTCTACCGGGCGGGAGATGAGGAAACCCTTGC
GCTGCAAGGCGTATCGCTGACAGTGCATAGTGGCGAGTTCGTCGCCGTCACTGGACCTTCCGGGTCGGGGAAATCGACGC
TCCTGGCCTGTCTGGCCGGGATGGACGACCCAGACGGCGGCAGTGCGCGCATCGCGGGCCAGCGGATCAGCCATCGCCCC
GAACCCGAACGAACCCGGATCCGGGCCCGACACATCGGCATGCTGTTTCAGAACGCCAACCTGCTGGACCACCTCACGGT
GGCGCAGAACTTGTCGTTGGTGCGCGGCCTGGCGGGACCCGCAGCGATCAGCCAGCCCGACGTGTTGACACTGCTGGGTC
TGTCCGAGCGGGCCGGGTTCTACCCCGGTCAGCTCTCCGGTGGCGAGCTGGCCCGTGCCGGACTGGCGATGGCGCTCGCC
AATGCTCCGGCCGCGTTGCTTGCCGACGAACCCACCGGTGAACTGGACAGTGCCACCGAATCACGGGTGCTCGACCTCCT
TTCCGATGCCGCGGGCCGCGGCACCGCGATCCTCGTTGCCAGCCACAGTCCCGCGGTCGCCGCCGCGGCCGCACGCCTGG
TTCGGCTCGATGACGGCCGGGTGTGCTCGTGA

Protein sequence : 
MKVELPPALEARSLYRFYRAGDEETLALQGVSLTVHSGEFVAVTGPSGSGKSTLLACLAGMDDPDGGSARIAGQRISHRP
EPERTRIRARHIGMLFQNANLLDHLTVAQNLSLVRGLAGPAAISQPDVLTLLGLSERAGFYPGQLSGGELARAGLAMALA
NAPAALLADEPTGELDSATESRVLDLLSDAAGRGTAILVASHSPAVAAAAARLVRLDDGRVCS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-23 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-23 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-23 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_06423 YP_007295979.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 1e-19 42