Gene Information

Name : Mycsm_06107 (Mycsm_06107)
Accession : YP_007295671.1
Strain : Mycobacterium smegmatis JS623
Genome accession: NC_019966
Putative virulence/resistance : Resistance
Product : site-specific recombinase, DNA invertase Pin
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6073044 - 6073607 bp
Length : 564 bp
Strand : -
Note : PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase

DNA sequence :
TTGGCAGTCATCGGATACGCACGGGTTTCGACGACCGATCAAAACCCCCAGCTTCAGCTGGACGCGCTTGAGCAAGCCGG
AGCGACGCGAATTTTCACCGACCATGGCGCGAGCGGCTCGACCGCGTCCCGACCCCATCTCGATGCCTGCCTCGACCACC
TCCGCGAAGGTGACGTGCTCACCGTATGGAAGCTGGACCGGCTCGGACGCAACACCCAACACGTTCTCGCCGTCGTCGAG
CAACTCACCTCTCGCGGGATCGGGTTCCGCAGCCTCACCGAAGGTCTGCACACCGAGGGACCGATGGGTACGGCGATGTT
GACGATCATGGCGGCCTTCGCCCAACTCGAACGCGACACCATGATCGAGCGGACCCGCGCCGGGCTGGCCGCTGCCGCCG
CCAACGGACGTAAGGGCGGGCGCCCACGCAAGGTCGACGACGCCGATGCCGCCAAGGCCCGTCAGCTTCGGGAGAAGGGC
ATCGCGGCTGCTGACATCGCAAAGATGCTGGGGGTCTCCCGCGCCACCGTGTACCGCTACCTCGCCGACGATGCGGCGGC
GTGA

Protein sequence :
MAVIGYARVSTTDQNPQLQLDALEQAGATRIFTDHGASGSTASRPHLDACLDHLREGDVLTVWKLDRLGRNTQHVLAVVE
QLTSRGIGFRSLTEGLHTEGPMGTAMLTIMAAFAQLERDTMIERTRAGLAAAAANGRKGGRPRKVDDADAAKARQLREKG
IAAADIAKMLGVSRATVYRYLADDAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDBH8_0918 YP_005160010.1 transposase-like protein Not tested Not named Protein 2e-25 49
res AGF34985.1 resolvase Not tested SGI1 Protein 7e-25 49
res AGF35025.1 resolvase Not tested SGI1 Protein 7e-25 49
res AGF35059.1 resolvase Not tested SGI1 Protein 7e-25 49
res AGK06929.1 resolvase Not tested SGI1 Protein 7e-25 49
res AGK06966.1 resolvase Not tested SGI1 Protein 7e-25 49
res AGK07012.1 resolvase Not tested SGI1 Protein 7e-25 49
res AGK07070.1 resolvase Not tested SGI1 Protein 7e-25 49
res AAK02044.1 resolvase Not tested SGI1 Protein 7e-25 49
tnpR ACD85600.1 TnpR resolvase Not tested SGI2 Protein 7e-25 49
binR YP_254224.1 resolvase/integrase BinR Not tested ¥ðSh1 Protein 3e-23 45
SH1761 YP_253676.1 DNA-invertase Not tested ¥ÕSh1 Protein 3e-23 45
binL YP_254524.1 DNA-invertase Not tested ¥ðSh2 Protein 3e-23 45
ABTW07_3871 YP_005797119.1 resolvase IS26 Not tested AbaR4e Protein 2e-21 45
tnpR ACN81015.1 TnpR resolvase Not tested AbaR5 Protein 2e-21 45
1_318 CAJ77076.1 Resolvase Not tested AbaR1 Protein 2e-21 45
tnpR ACK44544.1 Tn2 resolvase Not tested SGI1 Protein 6e-21 43
tnpR AGK07036.1 Tn2 resolvase Not tested SGI1 Protein 6e-21 43
tnpR AGK07094.1 Tn2 resolvase Not tested SGI1 Protein 6e-21 43
tnpR ACF06167.1 resolvase Not tested Tn5036-like Protein 1e-20 43
tpnR ADZ05795.1 resolvase Not tested AbaR17 Protein 8e-16 42
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 3e-20 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_06107 YP_007295671.1 site-specific recombinase, DNA invertase Pin GU371926.1.gene95.p0 Protein 6e-21 43