Gene Information

Name : Mycsm_05430 (Mycsm_05430)
Accession : YP_007295026.1
Strain : Mycobacterium smegmatis JS623
Genome accession: NC_019966
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5388224 - 5388925 bp
Length : 702 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGGACGGTGGAGCGGCTTCGCCCCGCGTGCTCGTAGTGGACGACGACCCTGACGTGTTGGCGTCGCTCGAGCGTGGCCT
GCGGCTGTCCGGATTCGATGTGGCCACGGCCGTCGACGGTGCTGAGGCGCTGCGCAGCGCCACCGAGACCCGGCCCGACG
CGATCGTGCTGGACATCAACATGCCGGTGCTCGACGGCGTCAGCGTGGTGACCGCGCTGCGAGCGATGGACAACGACGTG
CCGGTCTGCGTGCTCTCGGCGCGCAGCTCTGTCGACGACAGGGTGGCCGGGCTGGAGGCGGGCGCCGACGACTATCTGGT
CAAACCGTTTGTGCTGGCCGAGCTGGTCGCGCGGGTCAAGGCGCTGCTGCGGCGCCGCGGTGCGACGGCGACGTTCTCGT
CAGAGACCATCACGGTCGGCCCCCTTGAGGTCGACATCCCCGGCAGGCGTGCGCGCGTCAACGGCGCCGACGTCGACCTG
ACCAAGCGCGAGTTCGACCTGCTCGCCGTGCTCGCCGAGCACAAGACCGCGGTGCTTTCCCGCGCGCAGCTGCTGGAGCT
GGTGTGGGGTTATGACTTCGCGGCCGACACCAATGTCGTCGACGTGTTCATCGGCTACTTGCGTCGCAAGCTGGAGGCCG
GAGGTGCGCCACGGCTACTGCACACCGTCCGCGGCGTGGGGTTTGTCCTGAGGACGCAATAG

Protein sequence :
MDGGAASPRVLVVDDDPDVLASLERGLRLSGFDVATAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDV
PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATFSSETITVGPLEVDIPGRRARVNGADVDL
TKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-26 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 3e-31 46
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 7e-29 45
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 5e-30 44
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 9e-25 44
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 3e-32 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 8e-31 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 7e-24 42
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 1e-27 41
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 4e-26 41
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 1e-26 41
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 5e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 6e-83 96
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 4e-41 50
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 2e-35 46
Mycsm_05430 YP_007295026.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-26 42