Gene Information

Name : Mycsm_05264 (Mycsm_05264)
Accession : YP_007294867.1
Strain : Mycobacterium smegmatis JS623
Genome accession: NC_019966
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5217865 - 5218557 bp
Length : 693 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
GTGGCTGTGCGCATACTTGTCGTTGACGACGATCGCGCTGTGCGCGAATCCCTGCGCCGGTCGCTTTCGTTCAACGGATA
TTCCGTCGATTTGGCGCAGGACGGCCGCGAAGCTCTCGACTCGATCGCCAACGACCGGCCCGACGCCCTCGTACTCGACG
TGATGATGCCGAGGCTCGATGGCCTCGAGGTATGCCGTCAGCTTCGCAGCACCGGAGACGATCTGCCGATCCTCGTGCTG
ACCGCCCGCGACTCGGTGTCAGAGCGGGTGGCCGGGCTGGACGCCGGCGCTGACGACTACCTGCCCAAGCCGTTCGCTCT
CGAGGAACTGTTGGCGAGGATGCGCGCGCTGCTGCGCCGGAGGACCCCCGACGACAGCGCCGAATCGCCCGCGCTGACGT
TCTCCGATCTGTCCTTGGACCCGGTGACCCGCGAGGTCACCCGAGGGACGCGGCAGATCAGCCTGACCCGCACCGAGTTC
GCGTTGTTGGAGATGCTGATCGCCAACCCGCGGCGAGTGCTCACCCGCAGCCGCATCCTCGAAGAGGTGTGGGGATTCGA
CTTCCCGACGTCCGGCAATGCTCTCGAGGTGTACGTCGGATATCTACGCCGCAAGACTGAAGCCGAAGGAGAGCCGCGAC
TGATCCACACCGTGCGCGGGGTGGGTTACGTGTTGCGTGAAACACCGCCCTGA

Protein sequence :
MAVRILVVDDDRAVRESLRRSLSFNGYSVDLAQDGREALDSIANDRPDALVLDVMMPRLDGLEVCRQLRSTGDDLPILVL
TARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRRTPDDSAESPALTFSDLSLDPVTREVTRGTRQISLTRTEF
ALLEMLIANPRRVLTRSRILEEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRETPP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-32 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 4e-34 46
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 8e-39 45
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-33 44
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 2e-35 44
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 5e-29 44
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-34 43
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 7e-34 43
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 2e-33 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 1e-29 41
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain U82965.2.orf14.gene. Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 1e-86 92
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 1e-43 52
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 4e-44 50
Mycsm_05264 YP_007294867.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 5e-33 42