|
Name : Mycsm_04016 (Mycsm_04016) Accession : YP_007293678.1 Strain : Mycobacterium smegmatis JS623 Genome accession: NC_019966 Putative virulence/resistance : Unknown Product : ATPase component of various ABC-type transport systems with duplicated ATPase domain Function : - COG functional category : - COG ID : - EC number : - Position : 3940559 - 3942166 bp Length : 1608 bp Strand : + Note : PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region DNA sequence : GTGACCGATCCGATACTGAGCGTGCGTGGCCTGCGGGTCGGCATTGGCGACCGTCAGATCGTCCGAGATGTCGGCTTCGA CATCGATCGCGAGCAGACACTCGGAATCGTCGGCGAGTCCGGATCGGGAAAGACGATGACGGTACTTGCCGCCACGGGCT TGCTGGATGCTCCCGGCGCGGTCGTCGCGGGCAGCAGCGCCTTGGCCGACGGGACAGAACTCGTCGGCGCATCGCCTCGG CTGCTGCGCAGTGTGCACGGCGGCAGGATCGGCTTCGTCTTCCAAGACCCCGGCACGTCGCTGAATCCGTTGCTCACGTT GGAGCGCCAGATCACTGAATCGCTTGAGACACACCGGAAGATGACACGACGGCAGGCCAACACCCGCGCCCTGGAGTTGC TCAAGGCGGTCGGACTGCCGGATCCGCAGACGCGTCTGCACGCCTATCCCCACCAGTTGTCGGGCGGCCAGCGGCAGCGG GTGATGGTCGCGATCGCGCTGGCGTGCGATCCCGAACTGCTGATCGCCGACGAGCCGACCACATCGCTGGATGTGACGAC ACAGGCTCAGATCATCGGGTTGGTGCGGGATCTGCAGCGGGATTTCGGTACCGCGGTGGTGTGGATCAGTCACGATCTCG GCGTGATCGGTCAAGTGGCCGACGACGTAATCGTGTTGCGCGAAGGTGAAATGGTCGAGCAGGCACCGATCCTCGACGTC TTCGACCATCCGCAGCACGCGTATACCCGGGAGCTGCTGCACGCGCGCCCGCTCGTCGGCCGGTCCGGGCCTGCGCCGGT GCCCGATGATGCGCCGGTGTTGCTCCGGGTCGACGGTCTCGACGTGCAGTTCGCGGTGACGACGCTGGTTGGCAAGTCGA CAGTGCATGCGGTGAAACACCTTTCGTTCGAAATCCGCCGGGGCGCCACACTGGGCCTGGTCGGCGAGTCCGGGTCGGGC AAGTCGACTGTCGCCGGCGCGCTCACGGGGCTCGTCGAGCCGGACGCGGGTACCGCGCGGTTGGACAGTGTGGACATATT CGGTGTTCGTGGGGCGGCCGCGAAGGCGCTGCGCCGCAAGATCGGTCTGGTCTTTCAGGATCCGTTCTCGTCACTGAACC CACGCATGCAGGTGCAGACGGTGATCGACGAACCGTTGCGGGTACACGGACTCGCACCCGGCAAGGGTGGTCGTCAGGCC CGGGTAAAGGAACTACTCGAACTTGTCGGTCTGCCTGCGTCATTCGCTTCCCGTTACCCGCATGAGCTGTCGGGTGGGCA GCGACAGCGTGTGAGCATCGCCCGCGCGCTGGCCGCAGAGCCGGAGCTGTTGATTCTCGACGAAGCGACTGCGTCGCTGG ATGTTTCGGTGCAGGCTCATGTCCTGGACTTGTTGACGAACCTGCAACGCGAGCTCGGGTTGACGTATCTGTTCATCGGA CACGATCTAGCGGTCATCCAGCAGATGAGCCACGAGGTGTTGGTGATGCGTGACGGCGAGGCGGTCGAATATCGAACCGC CGCGGAGCTGTTCGCCGACCCCGAGCACGACTACACCCGCGCGTTGTTGGCGGCAGTCCCGCCCGCGCGACCACGCGCCG CCGTTTGA Protein sequence : MTDPILSVRGLRVGIGDRQIVRDVGFDIDREQTLGIVGESGSGKTMTVLAATGLLDAPGAVVAGSSALADGTELVGASPR LLRSVHGGRIGFVFQDPGTSLNPLLTLERQITESLETHRKMTRRQANTRALELLKAVGLPDPQTRLHAYPHQLSGGQRQR VMVAIALACDPELLIADEPTTSLDVTTQAQIIGLVRDLQRDFGTAVVWISHDLGVIGQVADDVIVLREGEMVEQAPILDV FDHPQHAYTRELLHARPLVGRSGPAPVPDDAPVLLRVDGLDVQFAVTTLVGKSTVHAVKHLSFEIRRGATLGLVGESGSG KSTVAGALTGLVEPDAGTARLDSVDIFGVRGAAAKALRRKIGLVFQDPFSSLNPRMQVQTVIDEPLRVHGLAPGKGGRQA RVKELLELVGLPASFASRYPHELSGGQRQRVSIARALAAEPELLILDEATASLDVSVQAHVLDLLTNLQRELGLTYLFIG HDLAVIQQMSHEVLVMRDGEAVEYRTAAELFADPEHDYTRALLAAVPPARPRAAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-97 | 42 |
