Gene Information

Name : Mycsm_02365 (Mycsm_02365)
Accession : YP_007292112.1
Strain : Mycobacterium smegmatis JS623
Genome accession: NC_019966
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2327692 - 2328414 bp
Length : 723 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence :
ATGACTGCCATCGATGAAACCGCAGGCACGACCCGCGAGTCCGAGGGGCACGCGCCCGTTATCGAGATTTTGGACGTGTG
GAAGCTGCACAAGCTCGGTGACGACGTGGTCCGCGCGCTCGTCGCAGCCGAACTACGGGTGATGCCTGGTGAATTCGTCT
GCTTGATGGGGCCGAGCGGCAGCGGCAAGTCGACGCTGCTCAACATCATCGGCGGCCTCGACCGCCCCACCAAGGGAACC
GTGAAGCTCGCGGGACGCGACACCGCGCTGCTGACCGAGAGCCAGTTCGCGGCGCTGCGTCACGACACCATCGGGTTCAT
CTTCCAGAGCTACAACCTGATCCCGTTCCTGTCGGCGGTGGAGAACGTCGAGCTGCCTTTGTTGTTCGAGCCCTACGACC
GCAAGTCGTTGCGTACCAGGGCGATCGAACTGCTCGAGCTCGTCGGTCTCGGACATCGGATTCATCACCAGCCGACCAAG
ATGTCGGGCGGCGAGCAGCAGCGCACCGCCATCGCGCGCTCGTTGATCAGCAATCCGACGCTGGTACTCGCCGACGAGCC
GACGGCCAACCTTGACCACCGCACGGGGGAAACGGTGGTGCGCATGCTGCGCGACCTGTGTTCCACGCTCGGCGTCACCG
TTGTCGCCAGCACGCACGACCCCACGGTGGCCGACGAAGCGACCCGTGTCGTCCGCATGAAAGACGGACAAATCGTCAAC
TGA

Protein sequence :
MTAIDETAGTTRESEGHAPVIEILDVWKLHKLGDDVVRALVAAELRVMPGEFVCLMGPSGSGKSTLLNIIGGLDRPTKGT
VKLAGRDTALLTESQFAALRHDTIGFIFQSYNLIPFLSAVENVELPLLFEPYDRKSLRTRAIELLELVGLGHRIHHQPTK
MSGGEQQRTAIARSLISNPTLVLADEPTANLDHRTGETVVRMLRDLCSTLGVTVVASTHDPTVADEATRVVRMKDGQIVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-24 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-24 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_02365 YP_007292112.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 3e-38 49
Mycsm_02365 YP_007292112.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 1e-33 47
Mycsm_02365 YP_007292112.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 5e-36 45
Mycsm_02365 YP_007292112.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 3e-35 41
Mycsm_02365 YP_007292112.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7685735. Protein 3e-29 41