Gene Information

Name : Mycsm_01153 (Mycsm_01153)
Accession : YP_007290981.1
Strain : Mycobacterium smegmatis JS623
Genome accession: NC_019966
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1164984 - 1165703 bp
Length : 720 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence :
ATGATTGAGAGACGGGGCGATCGCCCGATGTTGAAGATGACGGACGTCACCAAGACGTACCGCGTCGGTGGTCAGACCGT
GCGCGCGCTCGACGGCATCACCTTGACGTTGGCGGGTGGCGACTTTGTGGCCATCGTCGGTCCGTCAGGCTCGGGCAAGA
GCACTCTGCTGCACCTACTGGGCGCGCTGGATAGGCCGGACTCGGGATCAATCCAGTTCCAGGGCAAGGAAATCGCAGCG
CTAGACGACGAACGACAGTCCGAATTCCGAAGGCATAGCGTCGGATTCGTCTTCCAATTCTTCAACCTCCTGCCGACGAT
GACGGCATGGGAGAACGTGGCGGTGCCGAAGCTGCTCGACGGTTCACGGATGAAGAACGTCAAGGGGCGTGCGTTGGAAC
TGCTCGCTATGGTGGGCCTCGCCGATCGCGCTGAGCACCGACCATCGGAGTTGTCCGGCGGACAGATGCAGCGGGTCGCC
GTCGCCAGGGCCCTGATGATGGACCCGCCGTTGATTCTCGCCGACGAACCAACGGGCAATCTCGACACGAAAACCGGCTC
CGCGATTCTCGCGTTGCTCACCGACATCGCCCATCAGGATGGCCGTTCCGTTGTGATGGTCACGCACAATTTCGAGGCCT
CATCGGCAACAGATCGGGTGATCACGTTGACCGATGGCAGCATCGGCTCGGATGTGACGGGTCCTGCGGAACCCCTATGA

Protein sequence :
MIERRGDRPMLKMTDVTKTYRVGGQTVRALDGITLTLAGGDFVAIVGPSGSGKSTLLHLLGALDRPDSGSIQFQGKEIAA
LDDERQSEFRRHSVGFVFQFFNLLPTMTAWENVAVPKLLDGSRMKNVKGRALELLAMVGLADRAEHRPSELSGGQMQRVA
VARALMMDPPLILADEPTGNLDTKTGSAILALLTDIAHQDGRSVVMVTHNFEASSATDRVITLTDGSIGSDVTGPAEPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-37 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-38 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycsm_01153 YP_007290981.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 3e-46 46
Mycsm_01153 YP_007290981.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 1e-44 46
Mycsm_01153 YP_007290981.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 2e-44 44
Mycsm_01153 YP_007290981.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 4e-39 44