Gene Information

Name : Natpe_3865 (Natpe_3865)
Accession : YP_007282528.1
Strain : Natrinema pellirubrum DSM 15624
Genome accession: NC_019962
Putative virulence/resistance : Virulence
Product : ABC-type spermidine/putrescine transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3776964 - 3778001 bp
Length : 1038 bp
Strand : +
Note : PFAM: ABC transporter; TOBE domain

DNA sequence : 
ATGACCGCCCTCGAACTCGCGGGCGTCGCCAAACGCTACGGCGGGACCGCGGCGCTCGAGGGGATCGATCTGACGGTCCG
TGACGGCGAGTTCTTCACGCTCGTCGGGCCCTCCGGCTGTGGAAAGACGACGACGTTGCGGACCATCGCCGGTTTCGAGT
CGCCGACCGAGGGGACCGTCCGCTTCGACGGGCGGGCGATGGACGGCGTCCCGCCGGAGGAGCGAGACGTCGGCGTCGTC
TTCCAGAGCTACGCGCTATTTCCCCACATGAGCGTCGCCGAGAACGTCGGCTACGGGCTGCGGTTCCGGCAGCCGCCGGG
CGGACAGACCGTCGAGGAACGCGTCCGGGAACTGCTCGCGCTGGTCGACCTCGAGGGAATGGGCGAGCGCGACCCCGAGG
GGTTATCGGGTGGCCAGCGCCAGCGGGTCGCGCTGGCGCGGGCGCTCGCGCCGGCTCCCGATCTGCTCTTGCTCGACGAG
CCGATGAGCGCGCTCGACGCACAGCTCCGGGAGTCGCTGCGCCGGCAGATCAAACGGATCCAGTCGGCACTCGAGATCAC
GACGGTCTACGTCACCCACGATCAGGCCGAGGCGCTGGCGATCTCCGATCGCGTGGCGGTGATGAACGGCGGCCGGGTCG
AACAGGTCGGCCGGCCGCAGGTGATCTACCGCGAGCCCGAAACGCGATTCGTCGCCGAGTTCGTCGGCGACAACAACGTT
TTCGAGGGCACGGTTCGAGAGCGAGAGGCGGACCGGGCGCGGATCGACGTCGGCGGCGAGACCCTCGCGGTGTCGGCGGT
CCCGCCGGAGGCCGACCGGGTCACCGTCTGCGTGCGACCGGGTGCGCTCTCCCGGAACGTCGGGACCAACCGGCTGCCGG
TGACCGTCGAAACCAGCGAGTTCCTCGGCGAGACCGTCCGCGTCCACGGCCACTGGAACGGGGCCGAGATGGTCCTGCAA
CTCCCCGCGGTCCCCGAGGCCGACGAACTGACGGTCGGGTTCGACCCCGACGACGCCCACGTCGTCGCGACCGACTGA

Protein sequence : 
MTALELAGVAKRYGGTAALEGIDLTVRDGEFFTLVGPSGCGKTTTLRTIAGFESPTEGTVRFDGRAMDGVPPEERDVGVV
FQSYALFPHMSVAENVGYGLRFRQPPGGQTVEERVRELLALVDLEGMGERDPEGLSGGQRQRVALARALAPAPDLLLLDE
PMSALDAQLRESLRRQIKRIQSALEITTVYVTHDQAEALAISDRVAVMNGGRVEQVGRPQVIYREPETRFVAEFVGDNNV
FEGTVREREADRARIDVGGETLAVSAVPPEADRVTVCVRPGALSRNVGTNRLPVTVETSEFLGETVRVHGHWNGAEMVLQ
LPAVPEADELTVGFDPDDAHVVATD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 6e-27 42
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Natpe_3865 YP_007282528.1 ABC-type spermidine/putrescine transport system, ATPase component BAC0604 Protein 2e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Natpe_3865 YP_007282528.1 ABC-type spermidine/putrescine transport system, ATPase component VFG1206 Protein 2e-36 41