Gene Information

Name : Prede_1129 (Prede_1129)
Accession : YP_007278487.1
Strain :
Genome accession: NC_019960
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1418499 - 1419221 bp
Length : 723 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence :
ATGATGATACACCTCAAAGACATCAACAAGACCTACTTTGGAGCCCAGCCCTTGCACGTGCTCAAGGGCATCAGTCTTGA
CATTGACGAGGGCGAGTTCGTTTCAATCATGGGTGCTTCAGGGTCGGGCAAGTCCACCTTATTAAATATACTCGGCATTC
TCGACAACTATGACAGCGGTGAATACACGCTGGCCGACACGCTCATCCGCGACCTCAGTGAGAAGCGCGCCGCCGAATAC
CGCAACCGTTTCATCGGTTTCATCTTCCAGAGCTTCAACCTCATCGGCTTCAAGACAGCCGTGGAGAACGTGGAACTGCC
TCTGTTCTACCAAGGTGTGTCGCGCCGCAAGCGTCATCAGATGGCCCTCGACTATCTGGATCGGCTGGAGCTTTTGCCCT
GGGCCGACCACTATCCCAACGAAATGTCGGGCGGACAAAAGCAGCGCGTGGCTATCGCCCGCGCCCTCATCACCAACCCC
AAGATTATTCTCGCCGACGAACCGACGGGTGCCCTTGACTCGAAGACGAGTGTGGAGGTGATGGCCCTGCTCAAGAAACT
CAACGTCGAAGAGCGCAAAACCATCGTCGTGGTGACGCACGAGAGCGGCGTGGCCAACGAGACCAACAAGATTATCCATA
TCAAAGACGGACTCATCGGCCGTATCGAGGAGAACCTCGACCACAACGCCTCGCCCTTTGGAGGCGCGGGACCGATGAAG
TAA

Protein sequence :
MMIHLKDINKTYFGAQPLHVLKGISLDIDEGEFVSIMGASGSGKSTLLNILGILDNYDSGEYTLADTLIRDLSEKRAAEY
RNRFIGFIFQSFNLIGFKTAVENVELPLFYQGVSRRKRHQMALDYLDRLELLPWADHYPNEMSGGQKQRVAIARALITNP
KIILADEPTGALDSKTSVEVMALLKKLNVEERKTIVVVTHESGVANETNKIIHIKDGLIGRIEENLDHNASPFGGAGPMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-35 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Prede_1129 YP_007278487.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 3e-53 54
Prede_1129 YP_007278487.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 6e-36 47
Prede_1129 YP_007278487.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 2e-37 45
Prede_1129 YP_007278487.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 4e-35 43