Gene Information

Name : VPBB_0368 (VPBB_0368)
Accession : YP_007274062.1
Strain :
Genome accession: NC_019955
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 377942 - 378634 bp
Length : 693 bp
Strand : +
Note : Equivalent to RIMD VP0361 putative two component response regulator transcription regulator protein

DNA sequence : 
TTGAAAATATTGATCGTCGAAGATGAGCACAAAGCCGGAGAATATCTGCAAAAAGGTTTGATTGAATCTGGGTATGTGGT
GGATTTAGTGCATGATGGGGTCGATGGGCTTTATCACGCTACCAGTGAAGAATATGACTTAATCCTCCTCGACATTATGT
TGCCTAAACTCGATGGTTGGCAGGTGCTTAACACATTGCGCAGTAGTGGTATTCACACCCCAGTGATCATGCTGACAGCG
AAGGAGCAAGTGGAAGATCGCGTGCGCGGTTTTGAGTTGGGTGCCAATGACTATGTGGTAAAACCTTACGCGTTTGCGGA
GCTACTGGCGCGTGTTCAAAACGTATTTCGTCATCATATTGCCGCGCAAGTGGTCGCATCGCCGCAAACATTACGTGTGG
CAGATTTAGAACTTGATATGATCAAACGCGTTGCCACGCGCGCGGGGCAGTCGATGTCGCTTACCGCCAAAGAATATGCC
CTGCTTGAGTTGTTGATGCGCAAAACTGGCCAAGTGCTTTCACGTACCACCATTGCGTCGTTAGTGTGGGATATGAACTT
TGACAGCGATACCAATGTGATTGATGTGGCGGTCAAACGTCTGCGTAGCAAAGTGGACAAACCGTTCGATAAACCACTGA
TTCACACTGTCAGAGGGATGGGCTACAAACTCGAAGAGAGTCGTGATGCCTAA

Protein sequence : 
MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGWQVLNTLRSSGIHTPVIMLTA
KEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYA
LLELLMRKTGQVLSRTTIASLVWDMNFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEESRDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-52 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-51 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0197 Protein 3e-58 60
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0125 Protein 8e-59 57
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0308 Protein 4e-58 57
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0111 Protein 7e-56 57
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0638 Protein 5e-52 57
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0083 Protein 1e-59 56
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator BAC0347 Protein 5e-51 52
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 2e-27 42
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator AE000516.2.gene3505. Protein 1e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator VFG0596 Protein 3e-52 55
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator VFG1389 Protein 8e-31 43
VPBB_0368 YP_007274062.1 DNA-binding heavy metal response regulator VFG1390 Protein 4e-34 41