Gene Information

Name : VPBB_1717 (VPBB_1717)
Accession : YP_007275365.1
Strain :
Genome accession: NC_019955
Putative virulence/resistance : Unknown
Product : Integron integrase IntI4
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1910022 - 1911047 bp
Length : 1026 bp
Strand : +
Note : Similar to RIMD VP1865 site-specific recombinase IntIA

DNA sequence : 
ATGATAACTGGGCCAGTATTGATAAATTACAACACCTGTATGAATAAACAGCCCTATAATATTATGAAAAGTCAATTTCT
GCTAAGTGTAAAAGAGCATATGCTTACTCGCCATTATGCCAACAAAACTATCGAGAGTTACCTATTCTGGATAAAGCGCT
TTATTGTATTCCATCAGCTTGCTCATCCATCGAAGTTATCTGAAGACGACGTTATTCGATTTCTCAGCCACCTCGCTATC
GATGAAAAAGTTGCAGTCAAAACTCAAGCATTGGCGCTGAATGCTATTTCGTTTTTATATCGAGACTTTTTTAAAACCCC
GCTTTCACTGGATATGAGGTACCAAAAATCACTGACGGAAAAGAAGCTCCCTGTTGTTTTGACTCGCGATGAAGTCCGCA
GGTTTGTGCAACATATCGATCCGAGATATAAGCTTCACATCCAGCTCCTATACGGTTCTGGGCTTCGAATTATGGAATGC
CTTAGACTAAGAATCCAAGACATAGATTATGACTATGGTGCAGTGAGAGTCTGGCAAGGGAAAGGTGGAAAAAACCGTAC
GGTCACATTGGCGAAAGAGCTCCATGAGCCGCTAAAATCGCAGATGAACTTCGCAAGAAACTACTACTTCAAGGACCGGC
ATGTGCCCGGATACGCAGGTGTTTACATCTCTGAAGGTTTACGCCGTAAATATCCGAATGCAGAACTAGATTTCAATTGG
CACTTTTTGTTTCCATCCAATAAGTTAAGTGTCGACAAAGAGACAGGGCAACTGCGAAGACATCATATAAATGAAAGCGC
TATTCAAAGAGCGGTAAAGCGCTCCGCGCTCGATGCAAGCATAGAAAAAACTGTCACCTGTCACACGTTAAGACATAGCT
TTGCAACGCATTTATTGGAATCTGGTGCCGATATTCGAACAGTGCAAGAGCAGCTTGGCCACACCGATGTAAAGACCACC
CAAATATATACCCACGTGATTGAGAGAGGTGCAGGCGGAGTCCTAAGCCCTTTATCAAGTCTTTAA

Protein sequence : 
MITGPVLINYNTCMNKQPYNIMKSQFLLSVKEHMLTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAI
DEKVAVKTQALALNAISFLYRDFFKTPLSLDMRYQKSLTEKKLPVVLTRDEVRRFVQHIDPRYKLHIQLLYGSGLRIMEC
LRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNW
HFLFPSNKLSVDKETGQLRRHHINESAIQRAVKRSALDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTT
QIYTHVIERGAGGVLSPLSSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 5e-47 46
int1 YP_005160012.1 integrase Not tested Not named Protein 3e-51 45
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-60 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 7e-60 45
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-60 45
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-60 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 7e-60 45
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-60 45
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-60 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 7e-60 45
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 4e-60 45
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-60 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 7e-60 45
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-60 45
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 6e-60 45
intI1 AAK02045.1 integrase Not tested SGI1 Protein 7e-60 45
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-60 45
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-60 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 7e-60 45
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 3e-60 45
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-60 45
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 7e-60 45
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-60 45
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 3e-60 45
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-60 45
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 7e-60 45
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-60 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_1717 YP_007275365.1 Integron integrase IntI4 VFG1028 Protein 3e-60 45