Gene Information

Name : VPBB_1593 (VPBB_1593)
Accession : YP_007275245.1
Strain :
Genome accession: NC_019955
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1797100 - 1797678 bp
Length : 579 bp
Strand : +
Note : Similar to RIMD VP1734 DNA-binding response regulator

DNA sequence : 
GTGGATTGGGTGGAAAAAGGGTCTGGCGTGACTAGCGCACTCAAAACAGAAGCGTTCACTGCCGTGATTTTGGATCTCAC
TCTCCCCGATATCGATGGATTGGAAGTTCTGCGTAATATTCGCAAAGGCGGATTTAAGCTCCCAGTGATGATACTTACTG
CACGAGACGACATTCGCGATCGCGTTCAAGGCCTTGATGGCGGCGCAGATGATTACCTCGGAAAACCGTTTGCACTCGAA
GAGTTGCTCGCTCGCTTGCGTGTGTTGATTCGCCGTCAATCCGGTAGTGCAGAAGAAGTCATTCAAGTTGGGCAGTTATC
TTTATCCTTATCGGAACAAAGCATTCGCTACGATGACGCTCCGCTTAAACTCACACGCAATGAATTTAAAATCCTCACCA
GCTTGATGACGAACGCCGGACGCGTGCAAAGTAAGGAGCAATTGCAACAATCACTACACGGCTGGGATGAAGGTTCAAGC
GACAACGCGATAGAAGTTCACATTCATAACCTACGAAAAAAAGCCCCCAACGTCGCCATCAAAAACATTCGTGGTGTGGG
GTACATTCTTGAAAAATAA

Protein sequence : 
MDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGLEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALE
ELLARLRVLIRRQSGSAEEVIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHGWDEGSS
DNAIEVHIHNLRKKAPNVAIKNIRGVGYILEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-26 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_1593 YP_007275245.1 DNA-binding response regulator BAC0487 Protein 2e-33 51
VPBB_1593 YP_007275245.1 DNA-binding response regulator BAC0083 Protein 5e-19 42
VPBB_1593 YP_007275245.1 DNA-binding response regulator CP000647.1.gene1136. Protein 1e-20 42
VPBB_1593 YP_007275245.1 DNA-binding response regulator BAC0530 Protein 1e-20 42
VPBB_1593 YP_007275245.1 DNA-binding response regulator CP001918.1.gene2526. Protein 4e-20 41
VPBB_1593 YP_007275245.1 DNA-binding response regulator CP000034.1.gene2022. Protein 1e-20 41
VPBB_1593 YP_007275245.1 DNA-binding response regulator CP001138.1.gene1939. Protein 4e-21 41
VPBB_1593 YP_007275245.1 DNA-binding response regulator NC_002516.2.879194.p Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_1593 YP_007275245.1 DNA-binding response regulator VFG0473 Protein 2e-32 45
VPBB_1593 YP_007275245.1 DNA-binding response regulator VFG1390 Protein 1e-21 41
VPBB_1593 YP_007275245.1 DNA-binding response regulator VFG0475 Protein 4e-21 41