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Name : VPBB_1555 (VPBB_1555) Accession : YP_007275208.1 Strain : Genome accession: NC_019955 Putative virulence/resistance : Virulence Product : Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) Function : - COG functional category : - COG ID : - EC number : - Position : 1753674 - 1755560 bp Length : 1887 bp Strand : - Note : Similar to RIMD VP1696 putative type III secretion protein YscC DNA sequence : ATGCGAACTCTCATGCCAAAAATAGGGCGCATTGCCGCCCAAATGACATTGTGCGCACTGTGTGTCGTTCCGATGTTTTC TGTACAAGCGACAGAGCTCAATTGGCCAGAACAACCGTTTCGTTACTATGCCGATAATGATTCGTTGAAAGATCTGCTTA ACAACTTTGGTGCCAACTATCGAGTATCCGTGTCTGTGAGCGACAAAGTGAATGACCGAGTGAGTGGTCGATTCACGCCA GAAGATCCAGCGGAGTTTCTCGACTACCTAGCGCAAGTTTATAACTTGATGTGGTACTTCGATGGCGCAGTACTGCACGT TTACAAAGCGACAGAAACGCGCTCCCGATTGCTGCAATTGGAACTGCTTACCGCGCGCGAGCTTCGCAGTACCTTGATTT CAACCGGTGTTTGGGATGCTCGTTATGGTTGGCGCGCTGCCGAAAATAAAGGGCTGGTTTATCTAGCTGGGCCGCCGCGT TACGTTGAGTTAGTAGTGCAAACCGCAGAAGCGTTAGAGAGCCGATTGCTGCAAAAGTCAAACTCGACGGATGAGCTGTT TGTAGAACTCATTCCGCTTAAATATGCCTCGGCGACGGACAGAAGTATCTCGTATCGCGACCAAAGCATTACCGTTCCGG GGATTGCTTCGGTATTGAGTCGTGTGGTTGGCGGTGTTCAAACTCAAATTACGGATTCTGCGTCTGTACAAACATCGCCT GTAAACGGATTACCCGCAGAAGCAGCGAAACCTCGCGGCAAAACTGCGTCTGTGCACGGCGGTGCAACCGTAGAAGCGGA GCCGGGGCTGAATGCGATCATCGTTCGCGATACCCAAGCAAGACTGCCGTTATATCGCAAGCTGGTCGCTCAACTCGATC AGCCACAATCTCGTATCGAGGTTGCGTTATCTATTGTGGACATCAGCGCAAACGATTTACGTCAGCTCGGTGTGGATTGG CGTGCGGGTGTATCGGTTGGAAACAACCGCATTGTCGACATCAAAACAACTGGTGACGTTGATAACGGTGATGTCACATT GGGCAGTGGTCAGAATTTCAAGTCCTTGTTGGATTCCACCAACTTGAACTACTTGTTGGCACAAATTCGTTTATTGGAAT CGAAAGGCAGTGCGCAAGTCGTTTCCAGACCAACGCTGCTCACGCAAGAAAACGTCGAAGCGGTGCTAAACAACAGCAGC ACGTTTTACGTCAAATTGGTTGGCAAAGAGACGGCGGCTTTGGAAGAAGTGACGTATGGCACCTTGTTGCGCATTGTGCC TCGTATCGTCGGCGACAGATTCGCGACGCGACCAGAGATCAACTTGAGCCTTCATTTAGAAGATGGCGCAAAGATTCCAG ATGGTGGTGTGGATGATCTCCCATCGGTACGTAAAACCGAAATCAGTACGTTAGCGACGGTAAAACAAGGGCAAAGCTTA CTCATTGGTGGCGTATACCGAGACGAAGTTAGCCATCAGCTACGTAAAGTCCCGCTGTTGGGCGACATTCCGTACCTAGG TGCTTTGTTCCGCAGTAATACCAACACAACGCGCCGCACAGTTCGCATGTTCATTATCGAGCCGAGAATCGTGGTTGATG GCATTGGCGACAGCGTGTTGATAGGTAACGAGCATGATTTGCGCCCGAGTATTGGCCAGCTCAACAACATTTCGAACAAC AGCGCAGAATTTAAATCGGTTGTTGAAGTATTCAGCTGTACGTCAAAAACGCAGGCAGAACGTTACCAACAAGACTTACT GTCACAGCAAAAGTCCTCGCTGCTAACTCAATGTCAATTGCCGTCCGGGCAAGTAGGCTGGCGAGTCAAAGTGGCGGAAT GTGACCTTTCACAGGCCGAATGTGTTCGCCCTTCAGAGGAGCCATAA Protein sequence : MRTLMPKIGRIAAQMTLCALCVVPMFSVQATELNWPEQPFRYYADNDSLKDLLNNFGANYRVSVSVSDKVNDRVSGRFTP EDPAEFLDYLAQVYNLMWYFDGAVLHVYKATETRSRLLQLELLTARELRSTLISTGVWDARYGWRAAENKGLVYLAGPPR YVELVVQTAEALESRLLQKSNSTDELFVELIPLKYASATDRSISYRDQSITVPGIASVLSRVVGGVQTQITDSASVQTSP VNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDW RAGVSVGNNRIVDIKTTGDVDNGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSS TFYVKLVGKETAALEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLATVKQGQSL LIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFIIEPRIVVDGIGDSVLIGNEHDLRPSIGQLNNISNN SAEFKSVVEVFSCTSKTQAERYQQDLLSQQKSSLLTQCQLPSGQVGWRVKVAECDLSQAECVRPSEEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 3e-121 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VPBB_1555 | YP_007275208.1 | Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) | VFG0402 | Protein | 6e-129 | 49 |
| VPBB_1555 | YP_007275208.1 | Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) | VFG0211 | Protein | 2e-123 | 48 |
