Gene Information

Name : VPBB_1549 (VPBB_1549)
Accession : YP_007275202.1
Strain :
Genome accession: NC_019955
Putative virulence/resistance : Virulence
Product : Type III secretion cytoplasmic protein (YscI)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1750572 - 1750916 bp
Length : 345 bp
Strand : -
Note : Equivalent to RIMD VP1691 type III export protein

DNA sequence : 
ATGATCAATACACAGTACACCGAGGTGATGCAAACCAACCTTGAGAAGTTGCAAGATGCTCAAGTCGAAGACGGGCTGAG
TGAGCGTTTTGAACAAGCCATGTCTATTCCGGAGGGGAACATCGGTTTAGAAGGCGGTTTGCTAGAAAACATCAGCGAAC
TAAAAAACACCATCGACAACGCGAAAAGCAGTCTGCAAGACAGCATGAAAATGGTCGGTGACGATCCTGCGCAACTGTTG
CAAATGCAGTGGGCGTTAACGCGAATCACGTTTCAAGAAGAGTTGATCGCGAAAACCGTGGGTAAAACCACACAGAATGT
CGAAACGCTTTTGAAGGCGCAGTAA

Protein sequence : 
MINTQYTEVMQTNLEKLQDAQVEDGLSERFEQAMSIPEGNIGLEGGLLENISELKNTIDNAKSSLQDSMKMVGDDPAQLL
QMQWALTRITFQEELIAKTVGKTTQNVETLLKAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscI AAO18028.1 LscI Virulence TTSS locus Protein 2e-13 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VPBB_1549 YP_007275202.1 Type III secretion cytoplasmic protein (YscI) VFG0217 Protein 2e-12 45
VPBB_1549 YP_007275202.1 Type III secretion cytoplasmic protein (YscI) VFG0408 Protein 7e-11 44