|
Name : VPBB_1379 (VPBB_1379) Accession : YP_007275036.1 Strain : Genome accession: NC_019955 Putative virulence/resistance : Virulence Product : Sigma-54 dependent transcriptional regulator SypG Function : - COG functional category : - COG ID : - EC number : - Position : 1551782 - 1553263 bp Length : 1482 bp Strand : - Note : Similar to RIMD VP1469 putative LuxO repressor protein DNA sequence : GTGAAAGATGAGCCTTACGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCA ACTGATCATTTTGGATTTAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCA CTTCGGTCATCATCGCCACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTA GAAAAACCCATCAATGCCGACCGTCTTAAAACCTCTGTGGCACTGCATCTTAAACGAGCCAAATTGGAAGACTTGGTAGA AAACATTCAGTCTACCTTCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAA CGATAGATGCCGTCGCACCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAA GCCGTTCATCGCCAAAGTGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGA AAGTGAGATTTTCGGTCACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACG GTGGGACGCTATTTCTCGACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGC ACTTACACCCCACTTGGCGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTAC AGAGGTGGAAGAAGGACGCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTACCGATTGATATGCCACCTTTGAGAG AAAGAGGAAGTGACATCGTCACGTTAGCCAAACATTTTCTCACAACTTATGCCAAAGAGGACAAGAAAAAATTCTCTAAC ATTGATACTGAAGCGCAGCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAA TATCGTGGTACTCAACAATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAA GAACCGTAACCCCTGTGCACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACA CCACCCATTGAACCAGTGCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAG TCATTCCTTATCGCCATACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACG CGATCGCTTATTGTGATGGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAA CAAGCGTGGGAAGCGGATGAAGTTAATCTCGAACAATCCTGA Protein sequence : MKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFL EKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVAPTSASVFIVGESGTGKEVCAE AVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFLDELCEMELEMQKKLLRFLQTG TYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDIVTLAKHFLTTYAKEDKKKFSN IDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPVHVESSSPSNNLNGHNAPAMQT PPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCDGNVLNAAVMLELSPSTVYRKK QAWEADEVNLEQS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 2e-61 | 42 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 2e-61 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VPBB_1379 | YP_007275036.1 | Sigma-54 dependent transcriptional regulator SypG | VFG1214 | Protein | 2e-61 | 42 |
| VPBB_1379 | YP_007275036.1 | Sigma-54 dependent transcriptional regulator SypG | VFG0116 | Protein | 4e-62 | 41 |
