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Name : VPBB_0123 (VPBB_0123) Accession : YP_007273823.1 Strain : Genome accession: NC_019955 Putative virulence/resistance : Virulence Product : General secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 143396 - 145420 bp Length : 2025 bp Strand : + Note : Similar to RIMD VP0133 general secretion pathway protein D precursor DNA sequence : GTGAAACATTGGTTTAGCAAAAGTGCTTGGTTACTGGCAGGGAGTCTACTCTGCGTTCCAGGCGCGATGGCAAATGAATT TAGTGCGAGTTTCAAAGGCACTGACATTCAAGAATTCATCAACATTGTTGGTCGTAACTTAGAAAAGACCATCATCGTTG ACCCTTCGGTACGCGGTAAAATCGACGTTCGCAGCTACGACGTGTTAAACGAAGAGCAATATTACAGCTTCTTCCTTAAC GTGTTGGAAGTGTACGGCTATGCAGTCGTAGAAATGGACAACGGCGTACTCAAAGTCATCAAAGCAAAAGACTCTAAGAC CTCTGCAATCCCTGTTATGGGTGATGGCAGCGCAAAAGGCGATAGCGTCATCACTCGCGTGGTTGCTGTGCGAAATGTCT CTGTTCGTGAATTGTCACCGCTATTGCGCCAGCTGATTGATAACGCCGGGGCGGGTAACGTGGTTCATTACGATCCAGCT AATATCATCCTGATCACCGGTCGTGCAGCGGTAGTAAACCGTCTAGCAGAAATCATCAAACGCGTTGACCAAGCTGGTGA CAAAGAGATCGAGCTAGTAGAGCTTCGCAATGCCTCGGCTGCTGAAATGGTTCGTATCGTAGAAGCCCTGAACAAAACGA CCAACCAAAAGAGTACGCCTGAGTTTCTTGAGCCAAAAATCGTCGCGGATGAGCGTACGAACTCGATTCTGATTTCTGGC GATCCGAAAGTACGTGCACGCCTGAAACGTTTGATTCGTCAACTTGACGTAGAAATGGCAACGAAAGGTAACAACCGAGT GGTTTACCTTAAGTATGCAAAAGCAGAAGACCTAGTTGATGTACTGAAAGGTGTCTCTGACAACCTGCAAGCCGAAAAAC AAGCGGGTCAAAAAGGTGCATCCAGTGCACAACGCGGTGAAGTCGTGATTGCGGCTCATGAAGCAACCAACTCACTTGTT CTGACTGCGCCGCCAGATATCATGATGGCTTTGCAAGACGTAATTTCTCAATTAGATATTCGCCGTGCTCAGGTTCTGAT TGAAGCCTTGATTGTTGAAATGGCCGAAGGTGATGGTATTAACCTAGGCGTTCAGTGGGGGTCACTCGAAACGGGTGCTG TGATCCAGTACGGCAACACAGGTGCGCCAATTGGCCAAGTCATGGTTGGTTTGGAAGAAGCGAAAGACGTTACCAAAACG GAAAGCTACTGGAATAGTGACACGAACAAGTGGGAAAACCGTCAGTACACTGAAGAAGGTGACTACTCAACACTTGCATC TGCTCTTGGCGGCGTAAATGGTGCCGCAATGAGCATCGTGATGGGTGACTGGACGGCGCTAATTAGTGCGGTTGCTTCGG ATTCCAACTCAAACATCCTGTCTTCTCCAAGTATCACTGTGATGGATAACGGCGAAGCCTCATTCATCGTGGGTGAAGAA GTGCCTGTTATTACTGGCTCGACTGCTGGTTCAAACAACGACAACCCATTCCAAACCGTTGATCGTAAAGAAGTCGGTAT CAAGCTCAAAGTTGTACCACAGATCAACGAAGGTGATTCTGTTCAGCTAAATATTGAACAAGAAGTCTCTAACGTATTGG GTGCCAATGGTGCCGTTGACGTTCGTTTCGCGAAGCGCCAACTTAACACTTCCGTGATGATCCAAGATGGTCAGATGCTG GTGTTAGGTGGTTTGGTTGATGAACGTGCACTAGAAAGTGAATCGAAAGTGCCACTGCTTGGTGATATTCCAGTATTGGG TCACTTGTTCAAATCAACCAGCACGCAAACCGAAAAACGTAACTTGATGGTCTTCATTAAGCCGACCATCATCCGTGATG GTATGACTGCAGATGGTATCACTCAGCGCAAATACAACTTTATTCGTGCAGAGCAGCTTTACAAAGCTGACCAAGGCTTG AAATTGATGCCAGATGAGAAGATCCCTGTGATCCCAGCATTTGGCCAAGATCGTAAGCATCCTGCTGAAATTCAAGCGTT TATCGATCAAATGGAAAAGAACTAA Protein sequence : MKHWFSKSAWLLAGSLLCVPGAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKIDVRSYDVLNEEQYYSFFLN VLEVYGYAVVEMDNGVLKVIKAKDSKTSAIPVMGDGSAKGDSVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPA NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTPEFLEPKIVADERTNSILISG DPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLV LTAPPDIMMALQDVISQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTKT ESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVGEE VPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVMIQDGQML VLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGITQRKYNFIRAEQLYKADQGL KLMPDEKIPVIPAFGQDRKHPAEIQAFIDQMEKN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-169 | 56 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-162 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VPBB_0123 | YP_007273823.1 | General secretion pathway protein D | VFG2047 | Protein | 5e-159 | 54 |
