Gene Information

Name : Metfor_0321 (Metfor_0321)
Accession : YP_007247905.1
Strain : Methanoregula formicicum SMSP
Genome accession: NC_019943
Putative virulence/resistance : Unknown
Product : rRNA large subunit m3Psi methyltransferase RlmH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 317601 - 318080 bp
Length : 480 bp
Strand : +
Note : PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH

DNA sequence :
ATGCACATCCGAGTTATCTCCGTCGGCAGGATCAAGGAACGGTTCCTGCAGGACGGCATCCTTGAATATGAGAAGCGCCT
GCGCCCCTATGCGAAGATCCAGATCATCGAGGTTCCCGAAGAGAAACGCCCGGTGTCTGCAACCCCGCCAATTGAACGGG
CTGCGATGGCAAAGGAAGGGGAACGAATCTTTGCAGCCATCCCCGAGGGCTCGTATGTTGTTGCGCTTGACGTCAACGGG
GAGGACTGGTCAAGCACGGCCCTTGCCGAAGCCCTCTCGCGCTGGGAACTTGCCGGCAACAACCAGATCGCATTCATCAT
CGGCGGAGACCTCGGGCTTGCCCCGGCAGTTCTCTCAAGGAGCAACCTCCGGCTCTCCCTCTCGCACATGACGTTTACCC
ATCCGATAGCCCGCCTTCTTCTCATCGAGCAGATCTACCGGGCGTTCCGGATCCTCCGGGGCGAACCCTACCATAAGTAA

Protein sequence :
MHIRVISVGRIKERFLQDGILEYEKRLRPYAKIQIIEVPEEKRPVSATPPIERAAMAKEGERIFAAIPEGSYVVALDVNG
EDWSSTALAEALSRWELAGNNQIAFIIGGDLGLAPAVLSRSNLRLSLSHMTFTHPIARLLLIEQIYRAFRILRGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 7e-31 48
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 7e-30 48
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 7e-31 48
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 7e-31 48
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 7e-31 48
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 7e-31 48
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-30 48
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 7e-31 48
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-30 48
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 7e-31 48
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 7e-31 48
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-30 48
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 7e-31 48
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-30 48
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 7e-31 48
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-30 47
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-28 46
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 5e-30 45