|
Name : Thimo_0044 (Thimo_0044) Accession : YP_007242551.1 Strain : Thioflavicoccus mobilis 8321 Genome accession: NC_019940 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 41003 - 42775 bp Length : 1773 bp Strand : + Note : PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E DNA sequence : ATGGCCGTCGTCGAGTCCAGTCAGGATCGCGTCGAGCCCAAGCTGAATACCGCGAATATCGGTGAGGACAAGGTCGCTGA ACCGGCGGGCGAGAGCGACCCCCATGCCCCGATCGTCGCCGAGTTGCAGCGACGCGGTAAGCTCAGTGCGGCCGATTATC ACCGGGCGCAGCGCATCGCCGTTGAGAGCGGCGACGCGCTATTGCGCATGCTGGTCCGACTCGGGCTCGTTTCGGAGCGT GATCTGGCTCAGGTCTTCGCCGATGTCCTCGGTCTTGCGCTGGCCGAGCAGGCGACCTTTCCGCAGGAGCCAGTGGCCGA AGACCGGGTCAGCCTCCGCTTTCTGAAGGACGCCAGGATCCTGCCCTTACGCGAGGACGCGACCAGTCTGCAGGCCGCCT TCGCCGACCCGGCCGACCCCTTTCTTCGTGCGGCGCTGGCAGCGGCGGTGGATAAGCGGGTCCTGCCCCATGTCGGGCTC CCCTCCGAGATCGAGCTCGCCCTCGAACAGCTCTACGAACAATCCCCCGAGTCCACCGAGGAGCGCGAGCCGGATGCGGC CCTCGGCACGACCGATGAAGATGACATCGAGCACCTGAAGGACCTCGCCAGCGAGGCGCCGGTCATCCGAATGGTCAACC AGCTCATCCAGCGTGCCGTCGAGTGCCGCGCATCCGATATCCATATCGAACCCTTCGCCGACCAGCTCAAGGTGCGCTAT CGCATCGACGGTATCCTGAAAGAGGTCGAGCCGCCGCCGGTACGCTCGACCGCGGCCGTGATCTCACGCGTGAAGATCAT GTCGAAGCTCAACATTGCCGAGCGCCGCCTGCCCCAAGACGGGCGTATCCCGATCCGCATCCAGGGCAAAGAGTTGGATC TACGTGTCTCCACCGTGCCGACCATGTTCGGCGAGAGCGTCGTCATGCGCCTGCTCGACAAAGAGAGCGTGCGCTTCGAC TTCGATGCCCTCGGCTTCGACGGGCAGCCGCGCGAGCGCCTGCTGAGCATCCTGGATCAGCCCTACGGGATCCTGCTCGT CACCGGTCCTACCGGCAGCGGTAAGAGCACGACCCTCTATACGGCATTGAGCCGCCTCAACACCCAGGAACGCAAGATCA TCACGGTCGAGGATCCGGTCGAATACCAGCTCCAGGGGATCAATCAGATTCAGGTCAAGTCCTCGATTGGCATGACCTTC GCCGGGGCCCTGCGTGCGATTGTGCGCCAGGATCCGGATGTGATCATGGTCGGCGAGATGCGCGACCTGGAGACGGCGCG CATTGCCGTGCAGTCGGCCCTGACCGGCCACGTCGTCCTCTCGACCCTGCACACCAACGATGCGGCAAGCGCTGTGACCC GCCTGCTCGAGATGGGCGTCGAGGACTATCTGCTGACCTCGACCGTCAACGGCATCCTCGCTCAGCGCCTGGTGCGCCGC CTTTGCCCGCACTGTCGCATCGCGGCCGAGGTACCGCCGGCACTGGGCACGCGACTCGGTGAGCTCGCGCCGCAGGGATC GGTGCAACTCTTCCGCCCGGTCGGCTGCCCGCGTTGCAACGACATGGGCTATCTCGGCAGGCTCGTGATCGCCGAATCCC TCGTCGTCACCGATCCGATCCGCCAGGCCGTGCTGGCCCATGCTACCTCTTCCGAGATCCAGCGCATCGCGATCGCCGAG GGCATGATTACCATGTATGACGACGGCCTTCTCAAAGCCCTGAATGGACTGACGACCGTCGAAGAGGTGCTGCGCGTCGC CGAGGCGGCTTGA Protein sequence : MAVVESSQDRVEPKLNTANIGEDKVAEPAGESDPHAPIVAELQRRGKLSAADYHRAQRIAVESGDALLRMLVRLGLVSER DLAQVFADVLGLALAEQATFPQEPVAEDRVSLRFLKDARILPLREDATSLQAAFADPADPFLRAALAAAVDKRVLPHVGL PSEIELALEQLYEQSPESTEEREPDAALGTTDEDDIEHLKDLASEAPVIRMVNQLIQRAVECRASDIHIEPFADQLKVRY RIDGILKEVEPPPVRSTAAVISRVKIMSKLNIAERRLPQDGRIPIRIQGKELDLRVSTVPTMFGESVVMRLLDKESVRFD FDALGFDGQPRERLLSILDQPYGILLVTGPTGSGKSTTLYTALSRLNTQERKIITVEDPVEYQLQGINQIQVKSSIGMTF AGALRAIVRQDPDVIMVGEMRDLETARIAVQSALTGHVVLSTLHTNDAASAVTRLLEMGVEDYLLTSTVNGILAQRLVRR LCPHCRIAAEVPPALGTRLGELAPQGSVQLFRPVGCPRCNDMGYLGRLVIAESLVVTDPIRQAVLAHATSSEIQRIAIAE GMITMYDDGLLKALNGLTTVEEVLRVAEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-93 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-93 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Thimo_0044 | YP_007242551.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-91 | 47 |
| Thimo_0044 | YP_007242551.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-93 | 46 |
| Thimo_0044 | YP_007242551.1 | general secretory pathway protein E | VFG1876 | Protein | 2e-88 | 46 |
| Thimo_0044 | YP_007242551.1 | general secretory pathway protein E | VFG0112 | Protein | 2e-93 | 42 |
