Gene Information

Name : Thimo_3558 (Thimo_3558)
Accession : YP_007245845.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3900392 - 3901069 bp
Length : 678 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGCGCGTGCTCCTCATCGAAGACGACCCCCAGCTTGTCTCCTATCTGCGCAAGGCCCTGCTGGAGACGGGCGCGGTGGT
GGACGATGCCGGCGACGGCAAAGAGGGACTGCTCAAGGCATCGGTGGCGGAATACGACGTGTTGGTCATCGACCGCATGC
TCCCGGCCTTGGAGGGGCTCGCGGTCCTGCGCACCCTGAGGGCCGCCGGCAATCACACCCCGGCCCTGATCCTGAGTGCC
CTGGGCGAGGTGGATGACCGTGTCGAGGGTCTGCGCGCCGGCGGCGACGACTACCTCGCCAAACCCTTCGCCTTCGCCGA
GCTGCAAGCCCGCCTCGATGCCCTCTGTCGACGCCGGTCCGGGGACACCCAGCCGACGCGCCTGCGGGTCGGCGACCTGG
AGATGGACCTCCTGGGGCGGCGGGTCACCCGCAGCGGTCGCGAGATCCCCATGCAGCCTCGGGAGTTCCGCCTGCTGGAA
TACCTGCTGCGTCACGCGGGCCAGGTCGTGACCCGCACCATGCTGCTCGAAAACGTCTGGGACTACCACTTCGACCCCCA
GACCAACGTCATCGACGTGCACATCAGCCGCTTGCGGGCCAAGATCGACAAGGACTTCCCGAGCCCCCTGCTGCATACGG
TGCGTGGCGCCGGGTACGTGCTGCGTGCGGCCGGCTAG

Protein sequence : 
MRVLLIEDDPQLVSYLRKALLETGAVVDDAGDGKEGLLKASVAEYDVLVIDRMLPALEGLAVLRTLRAAGNHTPALILSA
LGEVDDRVEGLRAGGDDYLAKPFAFAELQARLDALCRRRSGDTQPTRLRVGDLEMDLLGRRVTRSGREIPMQPREFRLLE
YLLRHAGQVVTRTMLLENVWDYHFDPQTNVIDVHISRLRAKIDKDFPSPLLHTVRGAGYVLRAAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-42 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-41 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 3e-52 50
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 9e-49 49
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 1e-48 48
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 1e-44 48
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 2e-51 47
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-45 47
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 4e-45 45
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002516.2.879194.p Protein 8e-33 42
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0487 Protein 1e-27 41
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-42 46
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 2e-36 46
Thimo_3558 YP_007245845.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 2e-38 43