Gene Information

Name : join (Thimo_2923)
Accession : YP_007245249.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3208980 - 3209818 bp
Length : 839 bp
Strand : +
Note : PFAM: Integrase core domain; manually curated

DNA sequence : 
TTGGTTGGTGGCAGTCGTCCACCGCACATGCCGAATATCGCTTGCCTTGCGAACACGCGGTCCACGACGGCGAGACGCTA
TACCGACCCGGAGCATGAAGAGCAGCTCGAATGGGTCCAGGACCTGGCCGAGGCCTCGGATCACACCGATGGTTCGCGAC
GCATGGCCAAGTCGTTGCAAGATCAGGGCTATCGTGTCGGGCGCCATCAGGCGCGCAGCCTGATGCGCGAGGCCGGCGTG
TGGGTGCGCTACCGGCGCCGGTATCGGGTCACGACCAACAGCAAGCATGACCAGCCGATGTTCGAGAATCGCCTGGAGCG
CCAGTTCGCCGTCGAGGCCCCTGACCAGGTCTACGCCGATGACATCACCTACGTGTGGACGGCGCGGGGCTGGCTGTACT
GGCCGTGGTCATCGACCTGTACTCGCGCAAGGTGGTCGGCTGGTCGATGGGGCGGCGCCTGAACAGCGCCTTGGTCTGTG
ATGCCCTCCAGATGGCACTGTGGCAGCGCCGGCCACCGAAGGGGCAACTGATCCACCACTCCGACCACGGCGTACAGTAC
GCCAGTCGGGCCTTTCGCAGGCTGCTCGATGCCCACGGGATCGCCGGCAGCATGAGTCGCAAGGGCGATTGTTGGGATAA
CGCCGTGGTGGAGCGCTTCTTCGGCTCGCTGAAATCCGAACGCATCCACTGGCGTAGCGACCAAACCCGCGAGGAAGCCC
GAGCCGATATCGTCGATTACATCACGATGTTCTACAACAGCCGACGACTGCATTCGTATCTGGGGTATCAGAGCCCAGAT
GAGTTCGAAAGAAACGGCCTGTTGGCCAATGCGGCTTAA

Protein sequence : 
MVGGSRPPHMPNIACLANTRSTTARRYTDPEHEEQLEWVQDLAEASDHTDGSRRMAKSLQDQGYRVGRHQARSLMREAGV
WVRYRRRYRVTTNSKHDQPMFENRLERQFAVEAPDQVYADDITYVWTARGWLYLAVVIDLYSRKVVGWSMGRRLNSALVC
DALQMALWQRRPPKGQLIHHSDHGVQYASRAFRRLLDAHGIAGSMSRKGDCWDNAVVERFFGSLKSERIHWRSDQTREEA
RADIVDYITMFYNSRRLHSYLGYQSPDEFERNGLLANAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-36 47
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 7e-36 47
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-36 47
tnpB CAB61574.1 transposase B Not tested HPI Protein 6e-38 46
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-34 46
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-34 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 5e-38 45
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 5e-34 45
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 5e-34 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 5e-34 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-34 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 5e-34 45
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-34 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-34 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 7e-36 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 6e-36 45
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 5e-35 45
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-34 43
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-34 43
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-36 43
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-36 43
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-36 43
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-36 43
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-36 43
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-36 43
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-36 43
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-36 43
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 9e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
join YP_007245249.1 transposase VFG1706 Protein 3e-34 46
join YP_007245249.1 transposase VFG1484 Protein 6e-35 43
join YP_007245249.1 transposase VFG1122 Protein 1e-36 43