Gene Information

Name : Thimo_0280 (Thimo_0280)
Accession : YP_007242780.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 299829 - 300575 bp
Length : 747 bp
Strand : +
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence : 
GTGAATACCAAAGCTTCAGCGGTTTTTCTGTTCTGGACGATCCTGCTGGCAGCGACTCCGGCGGCGGCCGACTTCGGTCT
TGCCGCGGTGAAGATGACCACCAGCACCGACGGAATCACGACCTACACCGTGAGTCTGCAGATCTTGCTCCTCATGACCA
CGCTCACGGTGCTCCCGGCCCTTGTGCTGACCATGACCTCCTTCACGCGGATCATCATCGTGCTTGCCATTCTGCGCCAG
GCCCTGGGGACGATGCAGACTCCACCAAACCAGGTACTGATCGGATTGGCTTTGTTCCTAACCCTGTTCGTGATGTCGCC
GGTCCTGCAACGGGTCAATGAGGACGCAGTTCAGCCGTACCTGAAAGAGGAATTGCCGGCGGAGCGTGCCATCGAACAGG
CCTCGGTTTCATTGCGGAAGTTCATGCTGCCGCAGATTCGTGAGCAAGACCTGGCCCTGTTTGCCGACCTGGCCGATATC
GGTGATCTGCAATCCCCCGATGCGGTGCCCTTCTCGCTGTTGGTGCCAGCCTTCCTGACGAGCGAACTGAAGACCGCTTT
TCAGATTGGTTTCTTGGTCTTTCTGCCCTTTCTGGTAATCGATATCGTCGTGGCAGCGGTGCTGATGTCGATGGGGATGA
TGATGCTTTCGCCGATGATCATCTCCCTTCCCTTCAAGCTCATGCTTTTCGTGCTGATTGACGGCTGGACGCTGATCATC
GGCACGCTCGCCACGAGCTTCGCCTGA

Protein sequence : 
MNTKASAVFLFWTILLAATPAAADFGLAAVKMTTSTDGITTYTVSLQILLLMTTLTVLPALVLTMTSFTRIIIVLAILRQ
ALGTMQTPPNQVLIGLALFLTLFVMSPVLQRVNEDAVQPYLKEELPAERAIEQASVSLRKFMLPQIREQDLALFADLADI
GDLQSPDAVPFSLLVPAFLTSELKTAFQIGFLVFLPFLVIDIVVAAVLMSMGMMMLSPMIISLPFKLMLFVLIDGWTLII
GTLATSFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 8e-19 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 8e-19 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 8e-19 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-20 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-19 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-19 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-20 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-20 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-21 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-21 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-21 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-21 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-21 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-21 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG1259 Protein 3e-54 64
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG2338 Protein 5e-46 62
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG2494 Protein 4e-51 61
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG2016 Protein 8e-48 59
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG0044 Protein 4e-22 43
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG0394 Protein 9e-23 43
Thimo_0280 YP_007242780.1 flagellar biosynthetic protein FliP VFG0519 Protein 3e-20 42