Gene Information

Name : Thimo_2570 (Thimo_2570)
Accession : YP_007244924.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2840634 - 2841671 bp
Length : 1038 bp
Strand : +
Note : PFAM: Phage integrase family; TIGRFAM: integron integrase

DNA sequence : 
ATGCGCATGGCGATGGTGAGCACTGAGAGAGAAGATGCGTACATCCCAATCGATACCAACAGGATCGTCGGCCGCTCCAA
GCTGCTCGGCGATCTGCGCGATCTCATTCGCCGCAAGCACTACAGCATCCGCACCGAGCAGGCCTACCTACAGTGGGCCA
AACGGTTCATCCTGTTCCACGGCAAGCGCCATCCCAGCGCGATGGGCGAGGCCGAGCTCGTCGCCTTCCTGAACCATCTG
GCCGTTCAGCGCAACGTCGCCGCATCGACGCAGAACCAGGCCCTCAATGCGCTGGTCTTCCTCTACAAGCAACTGCTCGG
GCGCGAGGACCTTGCGCTCGACAACATACAACCGGCCAAACGGCCCGAGCGGCTCCCGACCGTCTTCGACCGCGGCGAGG
TCGAGCGCCACTTCGCCCAGATGGATGGCACACCAAAGCTCGTCGCCGCCCTCCTCTACGGGGCCGGCCTGCGCCTGCTG
GAGGGCCTGCGGCTGCGCATTCAGGACATCGAATTCGCGCGCAGCCAGATCATGGTCCGCAACGGCAAAGGCGCGAAAGA
CCGCGTCACCCTCTTGCCGCCAGGTCTGGCGCAGCCGCTACGCGAGCAGATGGCGGTGGCCAGGCAGCGGCATCAAGAAG
ACCTGGCCGCCGGCCTCGGCGAGGTCTACCTACCTCACGCCTTGGAGCGCAAGTATCCCAATGCGGCGCGCCAATGGGCC
TGGCAGTACGTCTTTCCGGCAAACTCCACCGCCATCAACCCGCGCTCCGGCAAGACCCCGCGGCACCACCTGGGCGAGAG
CGCAATCCGGCGCGCGGTAAAGCAGGCCGTCCTTGCGGCTGGCATCGACAAACACGGGCGCTGCCATACTCTCAGGCACA
GCTTCGCAACCCACCTGCTCGAAGACGGTTACGACATCCGCACCGTCCAGGAGCTGCTCGGTCACAAGGATGTCCGAACG
ACCATGATCCGCAGTCACGTGATGAACAAGGGGCCTATGGGCGTCAAGAGCCCGCTGACGCGCCTGGGCGGGTTTTGA

Protein sequence : 
MRMAMVSTEREDAYIPIDTNRIVGRSKLLGDLRDLIRRKHYSIRTEQAYLQWAKRFILFHGKRHPSAMGEAELVAFLNHL
AVQRNVAASTQNQALNALVFLYKQLLGREDLALDNIQPAKRPERLPTVFDRGEVERHFAQMDGTPKLVAALLYGAGLRLL
EGLRLRIQDIEFARSQIMVRNGKGAKDRVTLLPPGLAQPLREQMAVARQRHQEDLAAGLGEVYLPHALERKYPNAARQWA
WQYVFPANSTAINPRSGKTPRHHLGESAIRRAVKQAVLAAGIDKHGRCHTLRHSFATHLLEDGYDIRTVQELLGHKDVRT
TMIRSHVMNKGPMGVKSPLTRLGGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-65 51
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 4e-65 51
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-65 51
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 4e-65 51
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-65 51
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-65 51
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-65 51
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-65 51
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-65 51
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-65 51
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-65 51
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-65 51
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-65 51
intI YP_001844881.1 integrase Not tested AbaR20 Protein 4e-65 51
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-65 51
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-65 51
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 4e-65 51
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 5e-46 50
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 9e-65 50
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 9e-65 50
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 9e-65 50
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 9e-65 50
intI1 AAK02045.1 integrase Not tested SGI1 Protein 9e-65 50
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 9e-65 50
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 9e-65 50
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 9e-65 50
int1 YP_005160012.1 integrase Not tested Not named Protein 1e-50 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_2570 YP_007244924.1 integron integrase VFG1028 Protein 1e-65 51