Gene Information

Name : Thimo_2252 (Thimo_2252)
Accession : YP_007244628.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2500463 - 2501374 bp
Length : 912 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
ATGTACGGTCTCGTCGACGCACACCGCGACACCCATGGGGTCGAGCCGATCTGCAAGGTTCTGCAGGTTGCCCCGTCGGC
CTATCGCCGGTACGCGGCGCGCTGCAGGGATGCTTCTTTGCTGAGCGCCAGGGCGAAACGGGACGAGGCCCTGCGGTCCC
GGATCGAACAAGTCTGGGATGCCAACCGGCAGGTCTATGGCGCGGACAAGGTCTGGAAGCAGATGAACCGCGAAGGCGTG
GAGGTGGCGCGCTGCACGGTCGAACGCCTGATGCGCGGGCTCGCCCTGAGAGGAGTGAGGCGCGGCAAGGAGGTGCGCAC
CACCGTGACAGACCGCAAGGCGTCGTGCCCGCTGGACAAGGTCAATCGGCAGTTCCGTGCCGAGCGACCGAATCAGCTTT
GGGTATCGGACTTCACCTATGTCTCGACCTGGCAGGGCTGGTTGTACGTAGCCTTCGTCGTCGACGTGTTCGCCAGACGG
ATCGTGGGCTGGCGCGTGAGCACGTCGATGAGCACCGACTTCGTGCTCGACGCGCTGGAACAGGCGCTTTACGCGCGCCA
ACCTGAGCGCGACGGCAAGCTGATTCATCACTCGGATCGCGGGTCGCAATACGTGTCCATCCGGTACAGCGAGCGACTCA
GCGAGGCCGGCGTCGAGCCTTCGGTGGGCAGCAAGGGCGACAGCTACGACAACGCCTTGGCCGAGACCATCAACGGGCTG
TACAAGGCTGAACTGATCCATCGGCGTGCGCCGTGGAAGACCCGGGAGGCGGTGGAACTGGCCACGCTCGAATGGGTGTC
CTGGTTCAACCACCACCGCCTGCTGGAACCCATCGGCTACATTCCGCCTGCAGAGGCCGAGGCAAACTACTATCTGCAAC
TCACCCGTCAGACCTCCGCTGTGGAGGCCTGA

Protein sequence :
MYGLVDAHRDTHGVEPICKVLQVAPSAYRRYAARCRDASLLSARAKRDEALRSRIEQVWDANRQVYGADKVWKQMNREGV
EVARCTVERLMRGLALRGVRRGKEVRTTVTDRKASCPLDKVNRQFRAERPNQLWVSDFTYVSTWQGWLYVAFVVDVFARR
IVGWRVSTSMSTDFVLDALEQALYARQPERDGKLIHHSDRGSQYVSIRYSERLSEAGVEPSVGSKGDSYDNALAETINGL
YKAELIHRRAPWKTREAVELATLEWVSWFNHHRLLEPIGYIPPAEAEANYYLQLTRQTSAVEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-62 66
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-62 66
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-69 64
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-74 62
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-76 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-75 61
Z1198 NP_286733.1 transposase Not tested TAI Protein 6e-75 61
Z1638 NP_287141.1 transposase Not tested TAI Protein 6e-75 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-75 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-73 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-75 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-75 61
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-76 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-76 60
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-73 60
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-73 60
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-73 60
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-75 60
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-75 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-72 58
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-51 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 8e-52 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 8e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_2252 YP_007244628.1 transposase VFG1602 Protein 8e-73 58