Gene Information

Name : Thimo_2028 (Thimo_2028)
Accession : YP_007244419.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2249765 - 2250676 bp
Length : 912 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
ATGTACGGTCTCGTCGACGCACACCGCGACACCCATGGGGTCGAGCCGATCTGCAAGGTTCTGCAGGTTGCCCCGTCGGC
CTATCGCCGGTACGCGGCGCGCTGCAGGGATGCTTCTTTGCTGAGCGCCAGGGCGAAACGGGACGAGGCCCTGCGGTCCC
GGATCGAACAAGTCTGGGATGCCAACCGGCAGGTCTATGGCGCGGACAAGGTCTGGAAGCAGATGAACCGCGAAGGCGTG
GAGGTGGCGCGCTGCACGGTCGAACGCCTGATGCGCGGGCTCGCCCTGAGAGGAGTGAGGCGCGCCAAGGAGGTGCGCAC
CACCGTGACAGACCGCAAGGCGTCGTGCCCGCTGGACAAGGTCAATCGGCAGTTCCGTGCCGAGCGACCGAATCAGCTTT
GGGTATCGGACTTCACCTATGTCTCGACCTGGCAGGGCTGGTTGTACGTAGCCTTCGTCGTCGACGTGTTCGCCAGACGG
ATCGTGGGCTGGCGCGTGAGCACGTCGATGAGCACCGACTTCGTGCTCGACGCGCTGGAACAGGCGCTTTACGCGCGCCA
ACCTGAGCGCGACGGCAAGCTGATTCATCACTCGGATCGCGGGTCGCAATACGTGTCCATCCGGTACAGCGAGCGACTGA
GCGAGGCCGGCGTCGAGCCTTCGGTGGGCAGCAAGGGCGAGAGCTACGACAACGCCTTGGCCGAGACCATCAACGGGCTG
TACAAGGCTGAACTGATCCATCGGCGTGCGCCGTGGAAGACCCGGGAGGCGGTGGAACTGGCCACGCTCGAATGGGTGTC
CTGGTTCAACCACCACCGCCTGCTGGAACCCATCGGCTACATTCCGCCTGCAGAGGCCGAGGCAAACTACTATCTGCAAC
TCACCCGTCAGACCTGCGCTGTGGAGGCCTGA

Protein sequence :
MYGLVDAHRDTHGVEPICKVLQVAPSAYRRYAARCRDASLLSARAKRDEALRSRIEQVWDANRQVYGADKVWKQMNREGV
EVARCTVERLMRGLALRGVRRAKEVRTTVTDRKASCPLDKVNRQFRAERPNQLWVSDFTYVSTWQGWLYVAFVVDVFARR
IVGWRVSTSMSTDFVLDALEQALYARQPERDGKLIHHSDRGSQYVSIRYSERLSEAGVEPSVGSKGESYDNALAETINGL
YKAELIHRRAPWKTREAVELATLEWVSWFNHHRLLEPIGYIPPAEAEANYYLQLTRQTCAVEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 7e-62 65
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 6e-62 65
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-69 63
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-74 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 9e-73 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-74 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-75 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-74 61
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-73 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-75 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-74 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-74 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-75 59
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-75 59
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-75 59
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-73 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-73 59
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-75 59
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-73 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-72 58
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-51 57
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-51 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_2028 YP_007244419.1 transposase VFG1602 Protein 3e-72 58