Gene Information

Name : Thimo_1254 (Thimo_1254)
Accession : YP_007243681.1
Strain : Thioflavicoccus mobilis 8321
Genome accession: NC_019940
Putative virulence/resistance : Virulence
Product : Mn/Zn ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1358532 - 1359437 bp
Length : 906 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGAACAAGCCGAATCCTGAGCCTGACAGCACCGCTCGCCACTACGCCGCAAAGCTGGTCAGGCGCCTGAGCGGATTTCT
CGGCCGCGAACCATCAGGTCCTGTCGCCGAGGACGACTTGCACGAGCCACGCCTGGCGCTCCATGTCGAGGATCTCACCG
TCAGCTACCAGGGCGATCCGGTGCTCTGGGACATCGATCTCAACATCCCCCCGGGCGTCATGGCCGCCATCGTCGGCCCC
AACGGCGCCGGCAAGAGCACCCTGATCAAGGCCGTCTTGGGCCTGGTCCGGCCGGCCGCCGGGCACGTCCGGATCCACGG
CCGGCCCTACCGCGCCGAGCGGCGCCGGGTCGGCTATGTACCGCAACGCTCGAGCGTCGACTGGGATTTTCCCACCACCG
TCGTCGACGTCGTCACGATGGGCCTCTACGGCCAGCTCGGTTGGCTGCGCTGGCCGGGCCGTGCAGAGCATGCCCAGGCC
CTCGAGGCGCTGGATCTGGTCGGCATGCGCGACTTCGCCCAGCGCCAGATCAGCCAGCTCTCCGGGGGCCAACAGCAGCG
CGTGTTCCTCGCGCGCGCCCTCGTACAGCAGGCCGACGTCTACTTCCTCGACGAACCGATGGCCGGGGTCGACGCGACCA
CCGAGCGGGCCATCGTCGAGATCCTGCAGCGACTGCGCGACCAGGGTAAGACGGTGATCGTCGTCCACCATGACCTCCAG
ACGGTGCGCCGCTACTTCGATTGGCTACTGATCCTCAACGTGCGCGTCATCGCCCAGGGGCCCGTCGGCGAGGCTTACAC
AGCGGAGAATCTGCGCCGCGCCTACGGCGGGCAGATCGCGCTGCTCGGCCCGGAGGCCCTGCTCGACACCGCGACGCCGC
CGATGCCCTCGGAGGACGCGCGGTGA

Protein sequence : 
MNKPNPEPDSTARHYAAKLVRRLSGFLGREPSGPVAEDDLHEPRLALHVEDLTVSYQGDPVLWDIDLNIPPGVMAAIVGP
NGAGKSTLIKAVLGLVRPAAGHVRIHGRPYRAERRRVGYVPQRSSVDWDFPTTVVDVVTMGLYGQLGWLRWPGRAEHAQA
LEALDLVGMRDFAQRQISQLSGGQQQRVFLARALVQQADVYFLDEPMAGVDATTERAIVEILQRLRDQGKTVIVVHHDLQ
TVRRYFDWLLILNVRVIAQGPVGEAYTAENLRRAYGGQIALLGPEALLDTATPPMPSEDAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-49 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-49 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-49 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-48 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-48 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 6e-48 44
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 8e-48 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_1254 YP_007243681.1 Mn/Zn ABC transporter ATPase BAC0400 Protein 8e-75 63
Thimo_1254 YP_007243681.1 Mn/Zn ABC transporter ATPase BAC0350 Protein 2e-49 45
Thimo_1254 YP_007243681.1 Mn/Zn ABC transporter ATPase BAC0440 Protein 7e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thimo_1254 YP_007243681.1 Mn/Zn ABC transporter ATPase VFG0526 Protein 2e-49 45