Gene Information

Name : Psest_0426 (Psest_0426)
Accession : YP_007238664.1
Strain : Pseudomonas stutzeri RCH2
Genome accession: NC_019936
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 464394 - 465239 bp
Length : 846 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
GTGGAGTACCCGGTACGGCGTCTCTGCCAGACCCTCCAGGTACATCCCAGCGGTTACTACGCCTGGCTGGCCGAGCCGAA
ATCCGCACGCGAGAAGGAAGATCAGCGCCTGCTCGGATTGATCAAGCATGCCTGGCTGGAAAGCGGCGGGGTCTACGGCT
ACCGCAAGATCCACGACGACCTGCGTGAGCTGGGCGAGTCCTGTGGCCGGCACCGCGTGGCTCGCCTAATGCGGGTGGAG
GGGCTGCGTTCGCAGACCGGTTATCGTCGGCGCCCCGGCTATTACGGCGGTAAGCCGACGGTGGCTTCGCCCAACCGCCT
GGAGCGGCAGTTCAAGGTCAGCGAGCCGAACAAGGTCTGGGTCACCGACATCACCTACATCCGCACCTATGAGGGCTGGT
TGTACTTGGCGGTGGTGCTGGATCTGTTTTCGCGCCAGGTGATCGGCTGGTCGATGAAACCACGGATGTGCAGCGACCTG
GCCATCGATGCGTTGTTGATGGCGGTCTGGCGGCGCAAGCCCAGGCAGGAGGTGATGATCCACTCCGACCAGGGCAGCCA
GTTCAGCAGCTCGGACTGGCAGAGCTTCCTAAAGGCCAACAACCTAATCAGCAGCATGAGTCGACGCGGTAACTGTCACG
ACAACGCGGTCGCGGAAAGCTTTTTCCAGTTGCTGAAGCGGGAGCGCATCCGACGGAAAACCTACGGCACTCGCGAAGAA
GCCCGCAGTGATGTGTTCGATTACATCGAGATGGTCTATAACCCCAAGCGCCGGCACAGCAGCGCTATGCAGCTGTCGCC
AGTGGAGTTTGAAAAGCGTTATTTCCAGAGCTTGGAGAGTGTCTAG

Protein sequence :
MEYPVRRLCQTLQVHPSGYYAWLAEPKSAREKEDQRLLGLIKHAWLESGGVYGYRKIHDDLRELGESCGRHRVARLMRVE
GLRSQTGYRRRPGYYGGKPTVASPNRLERQFKVSEPNKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDL
AIDALLMAVWRRKPRQEVMIHSDQGSQFSSSDWQSFLKANNLISSMSRRGNCHDNAVAESFFQLLKRERIRRKTYGTREE
ARSDVFDYIEMVYNPKRRHSSAMQLSPVEFEKRYFQSLESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-38 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-38 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-43 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-44 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-44 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-46 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 3e-29 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-30 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-30 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 4e-29 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 3e-29 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 4e-29 42
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 1e-32 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-39 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-39 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psest_0426 YP_007238664.1 transposase VFG1631 Protein 2e-46 43
Psest_0426 YP_007238664.1 transposase VFG0785 Protein 2e-29 42