|
Name : Psest_4201 (Psest_4201) Accession : YP_007242301.1 Strain : Pseudomonas stutzeri RCH2 Genome accession: NC_019936 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : - COG ID : - EC number : - Position : 4378063 - 4379277 bp Length : 1215 bp Strand : - Note : PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F DNA sequence : ATGGCTGCCTTCGAATACCTTGCCCTCGACCCCCGCGGCCGTGAGCAGAAAGGTCTGATCGAGGCCGACAGCCCGCGTCA GGCGCGCCAGCTGCTGCGCGAGAAGCAGTGGGCACCGCTGGAGGTGAAGCAGGCCAAGTCCAAGGAAGACGTCAGCCGCG GCGGTTTCAGCTTCGGTCGTGGCCTGTCGGCGCGCGATCTGGCCTTGGTCACCCGCCAGCTGGCGACGCTGGTGCAGGCC GCGCTGCCGATCGAGGAAGCCCTGCGCGCGGCAGCGGCACAGTCCACCTCGGCGAAGATCAAATCGATGCTGCTGGCGGT GCGCGCGCGGGTGATGGAAGGCCACAGCCTGGCCGCCGCGCTGCGCGAATATCCATCGGCATTTCCCGAGCTCTACCGCG CTACGGTGGCGGCCGGTGAGCATGCCGGCCATCTTGGGCTGGTGCTCGACCAGCTGGCCGACTACACCGACCAGCGTCAG CAGTCGCGGCAGAAAATTCAGCTGGCGCTGCTCTATCCGGTGATCCTGATGGTCGCCTCGCTGGCCATCGTCGTGCTGCT GCTGGGCTACGTGGTGCCGGACGTGGTCAAGGTCTTCGTCAACACCGGCCAGGAGCTGCCGGCGCTGACCCGCGGTTTGA TCGCCACCAGTGACGTGGTGAAGAACTGGGGCTGGCTGATCGTGCTCGGCATCATCGCCGGCGTGCTGGCCATGCGTGCG GCATTGCGCGATCCGGCGCTGCGCCTGCGTTGGCACGCGTTCATCCTGCGGATACCGCTGATCGGTCGGCTGAGCCGGGC GACCAACACCGCGCGCTTCGCCTCGACCCTGGCGATCCTGACCAAGAGCGGCGTGCCGCTGGTGGAGGCGTTGTCCATCG CTGCTGCGGTGATCGCTAACCTGCGCATCCGCGAACGGGTGGTCGAGGCCGCGCAGAAGGTGCGCGAGGGCAGCAGCCTG ACCCGCGCACTCGACGCCACCGGCGAATTTCCGCCGATGATGCTGCACATGATCGCCAGCGGCGAGAAATCCGGTGAACT GGATCAGATGCTGGCGCGAACCGCACGCAATCAGGAGAACGACCTCGCTGCCCAGGTGTCTTTGCTGGTCGGTCTGTTCG AACCGTTCATGCTGGTGTTCATGGGGGCTGTGGTGCTGGTCATCGTGCTGGCGATCCTGATGCCGATCCTCTCTCTCAAC CAACTGGTGGGGTAA Protein sequence : MAAFEYLALDPRGREQKGLIEADSPRQARQLLREKQWAPLEVKQAKSKEDVSRGGFSFGRGLSARDLALVTRQLATLVQA ALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAALREYPSAFPELYRATVAAGEHAGHLGLVLDQLADYTDQRQ QSRQKIQLALLYPVILMVASLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWLIVLGIIAGVLAMRA ALRDPALRLRWHAFILRIPLIGRLSRATNTARFASTLAILTKSGVPLVEALSIAAAVIANLRIRERVVEAAQKVREGSSL TRALDATGEFPPMMLHMIASGEKSGELDQMLARTARNQENDLAAQVSLLVGLFEPFMLVFMGAVVLVIVLAILMPILSLN QLVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 5e-65 | 49 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-65 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psest_4201 | YP_007242301.1 | general secretion pathway protein F | VFG0181 | Protein | 6e-125 | 79 |
| Psest_4201 | YP_007242301.1 | general secretion pathway protein F | VFG2049 | Protein | 8e-64 | 48 |
| Psest_4201 | YP_007242301.1 | general secretion pathway protein F | VFG1870 | Protein | 8e-66 | 43 |
