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Name : Psest_4044 (Psest_4044) Accession : YP_007242144.1 Strain : Pseudomonas stutzeri RCH2 Genome accession: NC_019936 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : - COG ID : - EC number : - Position : 4214409 - 4217558 bp Length : 3150 bp Strand : - Note : PFAM: Domain of unknown function (DUF3387); Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family DNA sequence : ATGTTGAACGAACAGCAACTCGAAGAACTGTGCCTGAACTGGTTCCAGCAGGTTGGCTGGCGATTCGCCCACGGCCCGGA CATCGCACCGGATAGCAGCGCCCCCGAGCGGACCGACTACCGCCAGGTGGTTCTGCGAGAACGCCTGTTGGCCGCATTGG CACGGATTAATCCGCAGATTCCAGCTGCCGCCCTTGAACAGGCTGTGCACGCGCTGCAAACGGTGAGTGAGCCGCAGATG GTGGTGCGCAACCGCAGCGTGCACCGTTTGTTGCTCAGCGGTGTGGCGGTGCAGTTTGAAATCGGTGAGCAGAAGAAGCA GGACTGGGTGTACTTCATCGACTTTGCCCAACCTAGCAACAACGACTTTCTGGTGGTGAACCAGTTCACCATAACAGGCA CAAGGCAGCCACGCCGGCCAGACTTGATCGCCTTCGTCAATGGCTTACCGCTGGCCGTGGTGGAGCTGAAGAACCCCGCC AACGAACAAACGGACGTCTGGGACGCTTTTAATCAGCTGCAAACATACAAGGACGAAATCAGCGACCTGTTCAACAGCAA CGCCGCCTTGGTGGTGAGTGATGGCTGGACGGCGCGGGTCGGTTCGCTCACGGCGAATGCCGAACGTATGCTGCCCTGGC GCACCGTCCTCAACGAAGACGACCGACCGCGTCTGCAGATGGAGCTGGAGACGGTGGTGCGTGGCTTCTTCAAGCCTGAG CTGTTTCTGGATTACGTGCGGCACTTCGTGCTGTTCGAGCAGGATGGCGACAGCATCGTCAAAAAGATTGCCGGCTATCA CCAGTTTCATGCGGTACGTGAGGCTGTGCGCGCCACGGTGATTGCCTCCCAACATGCGGATAAAGGCGTGCTGGCGATCC ACGAAGAGCGTGCGACCTATGCCAAAGAGGTGAAGCCGGGCTCACGCAAAGCGGGTGTGGTGTGGCACACGCAGGGTTCG GGCAAGAGCATCACCATGGCCTGCTATGCGGGCAAGCTGTTGCAACAGTCCGAGATGAAGAACCCCACATTGGTCGTCGT GACCGACCGCAACGACCTAGACGGCCAGTTATTCGCCACCTTCTGCGCCGCCAGTGACTTGCTCAAGACAACCCCACAGC AAGCCGGTGACCGCGATGAGTTGCGCGAGATGCTGGCCTCACGCGAGGCGGGCGGCATCATCTTCACCACGGTGCAAAAA TTCGCGCTGCAGGAGGATGAAGAGAAGCATCCGTTGCTCTCAGATCGCACCAATATCGTGGTGATTTCCGATGAGGCCCA TCGCAGCCAGTACGGCAGCAAAGGCCGGTTGGACACCAAGACCGGCAAGTATGTGTTTGGCTATGCCAAACATCTGCACG ATGCACTGAAAAACGCCACCTTCCTCGGCTTTACAGGCACACCCATTGCCTTGGAAGACCGTGATACCCGCGAAGTGTTT GGTGACTACGTCAGCATCTACGACATTCAAGATGCCGTGGACGATGGCGCAACAGTGCCTATTTTCTACGAAAGCCGGCT GGCCAAGCTGGATGTGAACCAAGCCGAAATCGACACGCTCAATGAGCAGGTTGAAGAGGTTGTTGAAGACGAAGAAGACA TCGTCAGCCGAGAAAAAACCAAAGGCGAGTGGGCCGCGCTGGAAAAGCTTGTGGGTTCAGAACCTCGCCTGCAGCAGGTG GCGCGTGACCTGATCGAGCACTTTGAGGCGCGCGTATCTGTGGCAGACGGCAAGGCCATGATCGTGTGCATGAGTCGCGA CATTTGCGCTCATCTCTATAACGCCATCGTAAGTTTGCGCCCGGACTGGCACAGCGATGACCCCGAGCAAGGGGCTATCA AGATCGTGATGACGGGCTCGGCTGCTGACAAGGCTCTGCTGCAGCCGCACCTTTACAGCAAGCAGGTGAAGAAACGGCTG GAAACTCGCTTTAAAGACGTGAAAGACCCGTTGAAGCTGGTGATTGTGCGCGACATGTGGCTGACAGGCTTTGACGCGCC GTGTTGCCACACCATGTACATCGATAAGCCCATGAAAGGGCACAACCTGATGCAGGCCATTGCTCGCGTCAACCGGGTGT TTAAGAACAAGCCTGGCGGGCTGGTGGTGGACTACATCGGCATCGCCAACGAGCTGAAAGCGGCGCTAAAGACTTATACC GACGCCAAAGGTAAGGGTGACCCCACGCACAACTCTGCTGAAGCATTGGCTGTGCTGTTAGAGAAGATGGATATCGTGCG AGGAATGATGCACGGCTTTGACTACAGCGCGTTTGAAACCCAGCCACTCGAACTACTGGTGCCCGTTTCCAACCATATTC TGGGCCTAAAGGACGGGAAAACGCGCTTCCTCGACACCATGTTGGCGGTGACGAAGGCTTTTTCCTTGTGCGGTACGTTG GACGAAGCAGCGCCACTGCGTAAGGAGATTGCTTTCTTCTCGGCCATCAAGGCGGCCATTACCAAGTTCACCACTGTCGA TAAGAAGCGCAGCGATGCTGAGAAGAACAGCGCGCTCAAGCAGATTTTGGACAATGCCATCACCTCGGATGGCGTGGACG ATATTTTTGCGTTGGCCGGGCTGGATAAGCCCAACATCGGCCTGCTCTCGGATGAGTTCCTGGAGGACGTGCGGCAGATG GAAAGCCGCAACCTTGCCGTGGAGCTGCTGGAAAAACTGTTGCGTGACGAAGTTAAGGCGCGCGCGCGCAATAACGTGGT CCAGGAGAAGAAGTACGGCGACCGCTTGCTGGAAACGTTGCGCAGGTATCACAACCGCGCGATCGAAACGGCACAGGTCA TTGAAGAACTGATCCAGATGGCCAAGGAGTTCAAGGCCGCGCTTGAGCGGGAAGCCGCGCTGGGTCTGAGTCACGATGAA ATTGCCTTCTACGATGCATTGGCCAACAACGAAAGCGCGGTGCGCGAGTTGGGTGACGAGACGCTGAAGAAAATCGCAGC GGAGCTTACCGAGAAGCTGCGCGCCAGTACGACTATCGATTGGCAGGTTCGTGAGAGCGTCCGGGCGAAACTGCGCATTT TGGTGCGTCGCTGTTTGCAGCGGTGGAAGTACCCGCCAGACCAGCAATCAGATGCAGTGGAGTTGGTGCTGAAGCAGGCA GAGTCGCTGTCGAATGAGTGGTCACTGTGA Protein sequence : MLNEQQLEELCLNWFQQVGWRFAHGPDIAPDSSAPERTDYRQVVLRERLLAALARINPQIPAAALEQAVHALQTVSEPQM VVRNRSVHRLLLSGVAVQFEIGEQKKQDWVYFIDFAQPSNNDFLVVNQFTITGTRQPRRPDLIAFVNGLPLAVVELKNPA NEQTDVWDAFNQLQTYKDEISDLFNSNAALVVSDGWTARVGSLTANAERMLPWRTVLNEDDRPRLQMELETVVRGFFKPE LFLDYVRHFVLFEQDGDSIVKKIAGYHQFHAVREAVRATVIASQHADKGVLAIHEERATYAKEVKPGSRKAGVVWHTQGS GKSITMACYAGKLLQQSEMKNPTLVVVTDRNDLDGQLFATFCAASDLLKTTPQQAGDRDELREMLASREAGGIIFTTVQK FALQEDEEKHPLLSDRTNIVVISDEAHRSQYGSKGRLDTKTGKYVFGYAKHLHDALKNATFLGFTGTPIALEDRDTREVF GDYVSIYDIQDAVDDGATVPIFYESRLAKLDVNQAEIDTLNEQVEEVVEDEEDIVSREKTKGEWAALEKLVGSEPRLQQV ARDLIEHFEARVSVADGKAMIVCMSRDICAHLYNAIVSLRPDWHSDDPEQGAIKIVMTGSAADKALLQPHLYSKQVKKRL ETRFKDVKDPLKLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANELKAALKTYT DAKGKGDPTHNSAEALAVLLEKMDIVRGMMHGFDYSAFETQPLELLVPVSNHILGLKDGKTRFLDTMLAVTKAFSLCGTL DEAAPLRKEIAFFSAIKAAITKFTTVDKKRSDAEKNSALKQILDNAITSDGVDDIFALAGLDKPNIGLLSDEFLEDVRQM ESRNLAVELLEKLLRDEVKARARNNVVQEKKYGDRLLETLRRYHNRAIETAQVIEELIQMAKEFKAALEREAALGLSHDE IAFYDALANNESAVRELGDETLKKIAAELTEKLRASTTIDWQVRESVRAKLRILVRRCLQRWKYPPDQQSDAVELVLKQA ESLSNEWSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 67 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 44 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 44 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 44 |
